rs253670567 SNP Detail

Summary

• ID
  rs253670567
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:23894027 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGTTCTTTC AATCTTTTTT
  TCTTCTTTTA GGAGCCCTTG CCCAGAGCTG CTTCTCTGGC GCTATCCCGG GAGCCTGATT
  CCTGAAGCCC TCAGGCTGCT GAGGCTGGGG GATACCCCCA GTCCCTACTA CCCTGCGTCC
  CCAGCTGGGG ATATCGTGGA GCTCTGAGTA TTGATGGCCT GTGTCCCTCC CTATCTTCTT
  Y
  CTGACAACAA AGACCAGCAA CTCCCAGAAA GGGATGAAGT CCTTCTGCAA ACCTGGCCAC
  CAGGACCTTC CCTCTGACAA GAGGACACTA GCTCGGTGGA ACCCTCAGTG AAAGGCAGCC
  TGGGAAAGGG AAAATGTTAC CCCATTAGTG AATAAAGACC TGTGAGCAGT TGAAGATTTC
  TCAGCAGCCT TTGGGGAGGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss397840171	MGP_WTSI_17_23812020	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs253670567					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss397840171	MGP_WTSI_17_23812020	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:23894027 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8682	CpG island 8682	940 bp distal
Cpgi8683	CpG island 8683	1387 bp proximal
Hcfc1r1	host cell factor C1 regulator 1 (XPO1-dependent)	within coordinates
Rr339270	regulatory region 339270	within coordinates
Rr405075	regulatory region 405075	1308 bp downstream
Thoc6	THO complex 6	1171 bp upstream
Tnfrsf12a	tumor necrosis factor receptor superfamily, member 12a	392 bp downstream
Tssr142940	transcription start site region 142940	1401 bp downstream
Tssr142941	transcription start site region 142941	1066 bp downstream
Tssr142942	transcription start site region 142942	1052 bp downstream
Tssr146635	transcription start site region 146635	1476 bp upstream
Tssr146636	transcription start site region 146636	1166 bp upstream
Tssr146637	transcription start site region 146637	6 bp downstream
Tssr146638	transcription start site region 146638	798 bp downstream
Tssr146639	transcription start site region 146639	1509 bp downstream
Tssr146640	transcription start site region 146640	1534 bp downstream
Tssr146641	transcription start site region 146641	1588 bp downstream
Tssr146642	transcription start site region 146642	1607 bp downstream