rs253675019 SNP Detail

Summary

• ID
  rs253675019
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:4252973 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCTTTCACT GTCCAGACAC
  AGTCCTCAGT GACCCGCCCC CCCCCCCCCC CCCGGTGGGC TTAACTCTCC TGGCAAAGTC
  CAGTCTCTTG ATCAGGAACT TTGAGGATCC AGGTCCCACA GAGGTCTTCA CTGTCTCCTA
  CCCCACATGA TCACCTATCT CCATAGCCCT GCCAGGCTCT TAGCGGCCAC TCTGGCTGCT
  Y
  CCAAGGCTGT AGCCTGCTTC TCCCATGCTG ACTTCTCTTC CTGGGCTCAA CAGCAAAGGT
  TCCCTCAGCA GAGAAAACCC TAGGCTTTGA GCCATGGTGT GTCCCAGTTT CCTCTGTGTT
  TAATATTTGT GCTTCCTGCT GTTGTGGCTG CTGCATGTGG GCAGGAACTG CTTCTGTTTT
  GTTTATTGCT CTGTGTACTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss401632788	MGP_WTSI_19_4202974	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs253675019					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss401632788	MGP_WTSI_19_4202974	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:4252973 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10391	CpG island 10391	1000 bp distal
Gm30082	predicted gene, 30082	within coordinates
Gm59014	predicted gene, 59014	1225 bp upstream
Rad9a	RAD9 checkpoint clamp component A	1312 bp upstream
Rr405788	regulatory region 405788	1110 bp downstream
Rr542669	regulatory region 542669	1211 bp distal
Rr542670	regulatory region 542670	461 bp distal
Rr542671	regulatory region 542671	430 bp proximal
Rr542672	regulatory region 542672	735 bp proximal
Rr542673	regulatory region 542673	1236 bp proximal
Tssr154297	transcription start site region 154297	1158 bp downstream
Tssr154298	transcription start site region 154298	1220 bp upstream
Tssr154299	transcription start site region 154299	1237 bp upstream
Tssr157469	transcription start site region 157469	1549 bp upstream
Tssr157470	transcription start site region 157470	1385 bp upstream
Tssr157471	transcription start site region 157471	1351 bp upstream