rs253680104 SNP Detail

Summary

• ID
  rs253680104
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:73967428 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCACCGCTGT CCTCGCCACG
  GACTCCACAT AGCTCCGGGG CTCTAGAAGG AAAGAGACAA AGAATGAGCA TAGATGTGGT
  AGGAGTCCAC CCACCCTACC AGGGACTACA GCACACCCAG AGTCCAGCCT GAGAAAGAGA
  CAGCATAGAA ACCTTCCCCA GGACATTGGG GTGCTTTACT GAGGCTCCTG CTTGCCCTTA
  Y
  TCCCCAGCCT GAGGCGAGCT TTAAGGAGCT TTCAGAACTC TCTGCTCCCC TAGGCTCTGC
  CTCTGCAAAA GGCCACTAGC TCTCCCTCCA AGACTGTGCT TGTTCAAGGC TGGCCTCCCC
  TTTGCAGTCT TATTTCCGCC CAGCCCTAGC AGGGTCCCCA GATGCTCCTA GAGCAGCCCC
  AAAGCCATCA CCTTCGCCCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss350112151	MGP_WTSI_1_73974843	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs253680104					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss350112151	MGP_WTSI_1_73974843	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:73967428 () rs orientation: forward

Symbol	Name	Function Class
Rr413030	regulatory region 413030	1697 bp distal
Rr413031	regulatory region 413031	1809 bp distal
Rr413032	regulatory region 413032	1460 bp distal
Rr413033	regulatory region 413033	within coordinates
Rr413034	regulatory region 413034	234 bp proximal
Rr413035	regulatory region 413035	802 bp proximal
Rr413036	regulatory region 413036	1635 bp proximal
Rr413037	regulatory region 413037	1933 bp proximal
Tns1	tensin 1	within coordinates
Tssr117	transcription start site region 117	226 bp downstream
Tssr12216	transcription start site region 12216	235 bp downstream
Tssr12217	transcription start site region 12217	1048 bp downstream