rs253684158 SNP Detail

Summary

• ID
  rs253684158
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:128514341 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCATAATCCC TGTGCCCAGG
  CAGGGGGATC ACAATTATGA GGTCAGCTTG TACTACATTG TGAGTTTCAG GTTCGACTGA
  GCTAAATATA AAGACCCTGA CTGAGATGGT CTGAGAGAGG GTGATGAGTG GAAGGAAGGA
  GGGAAGAACA GAGCTGAAAA TTAGAAAGCT AGGCCATAGA CCCAAAAGTT AGGGGAAAAA
  W
  TTTTTCTAAA GAAAAACAAG AGTCTCACTT CCCCCATTTA TACAATAACC CACATCAAAC
  TAGACATCCT AGCATAAACA CCTGTCAAAC TGGGCTCAAC ACAGGAGCAG TCGCTTTCAG
  ATATGAGGAC ATTGTCACAG GGCATTTGGG TTGCTCCAAC AAACAATACC GTAAACCTGG
  AGGACATGGA CTTTAAAAAG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321305880	CHEV_4_128297792	CHEVERUD	SCREENING_POP	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs253684158					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:128514341 () rs orientation: forward

Symbol	Name	Function Class
Rr599982	regulatory region 599982	1614 bp distal
Rr599983	regulatory region 599983	1235 bp distal
Tlr12	toll-like receptor 12	1929 bp upstream
Tssr43438	transcription start site region 43438	1951 bp upstream
Tssr43439	transcription start site region 43439	1923 bp upstream
Tssr43440	transcription start site region 43440	1902 bp upstream