rs253686972 SNP Detail

Summary

• ID
  rs253686972
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:153425660 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCTCTGAGC AGCGCGGTTG
  CGCTTTTAAC TCAGGGGCTG CGGGACCACG TGGGGCCGCG CGGGGAGCCT GGGGGTTGTA
  GTTCCACGTC GGGCCGGGGA GCTGCTTCAC CGGCTGGAAT CCCGAGACTG CACTAGTTGC
  TCCTTCTTGG GTGTGGCCAC AGCCTATTTT GTGAAAGACT CGTAGCTCCT GCACCTCTTG
  R
  ATACCCACTG TCCTTATTAT TCTGAGTCCG GGAGTTCTCC TCCTGTTCAA GTCCTGCAAG
  TGCCAAGTCT TGTTTGCATT GGATGTGAGA TGTTGTGATA CAGTGGTGGC TGCCTAGCAG
  CCACTTGGCT CTCTAGACTG ACACTACTGC TCCAGTCCTG CCCATTGCCT TGTAGGAAAA
  GGGAGAAGTG AGAAGATTTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss351975352	MGP_WTSI_1_155397044	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs253686972					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss351975352	MGP_WTSI_1_155397044	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:153425660 () rs orientation: forward

Symbol	Name	Function Class
Cpgi868	CpG island 868	53 bp distal
F630010C12Rik	RIKEN cDNA F630010C12 gene	203 bp upstream
Npl	N-acetylneuraminate pyruvate lyase	200 bp upstream
Rr420696	regulatory region 420696	1938 bp distal
Rr420697	regulatory region 420697	within coordinates
Rr420698	regulatory region 420698	121 bp proximal
Rr420699	regulatory region 420699	977 bp proximal
Rr420700	regulatory region 420700	1063 bp proximal
Tssr14276	transcription start site region 14276	190 bp upstream
Tssr14277	transcription start site region 14277	169 bp upstream
Tssr14278	transcription start site region 14278	86 bp upstream
Tssr14279	transcription start site region 14279	59 bp upstream
Tssr14280	transcription start site region 14280	131 bp downstream