rs253693159 SNP Detail

Summary

• ID
  rs253693159
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:151247800 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    gccccttga taagctccag cagctcatag
  atggggtaga tgttagagtg ggccaactca aaagccctgg gtagaataac tgagctgttc
  aatcccagtt ctctagcact gcccaagggc agctcgccca agtgcctatg ctggcaaggg
  R
  cagggccagc tctcctTGTA TATCTTAAAT ATAATATGTT TAAGAAAACA AATGTTATTG
  GCAAATTTTT ATGACACTAA GAAACTTTAA TTTAGGCTAG CCTGTACAAG AGAGCAAGAT
  CCTGGCTCAA AATAAAAAAA CAAACAAACA                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320055964	CHEV_1_153219179	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs253693159					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:151247800 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr420285	regulatory region 420285			55 bp distal
Swt1	SWT1 RNA endoribonuclease homolog (S. cerevisiae)			Intron
				Noncoding-Transcript-Variant