rs253701711 SNP Detail

Summary

• ID
  rs253701711
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:99760241 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCTGCTACA CTAGGGGATT
  GGAGATCCAG AGATACTAAT TCTACTGGGT GATGGTAGCT GCTTTGGAAA GAAATGAGAG
  AAATAACCGT GTTTGCAGAG TGAGGACTCA CCAGCCACAC TTAGAGGTTT AGGCCATTGT
  AGTACAACTT CTCAACTTCT TGGACATTGC TTAATGAGGG ATCTGACGCT GGGTCTCAGG
  Y
  TCTTTTATTC TGAGCTGGCT TCCTAGACAG TCTATCTAGT TGCCCTGGAG CAGTCTGGGA
  CTGGAGAGTA CCCTTTTCCA ATTCTTCTTA GTTCTTCTTT CTCCTCTAGT AGATGGCTCT
  CTTCTCCAAT CCTCTCAAAT CGAGCCCTGA GTTGGAACTC AATAGCTACA ATTCAAGAGC
  TATCCTCCAT CGGAAGAGGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323137477	CHEV_9_99778607	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs253701711					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:99760241 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22205	CpG island 22205	1718 bp distal
Gm16004	predicted gene 16004	within coordinates
Gm67910	predicted gene, 67910	1464 bp downstream
Rr685465	regulatory region 685465	1528 bp distal
Rr685466	regulatory region 685466	within coordinates
Tssr91083	transcription start site region 91083	1995 bp upstream
Tssr91084	transcription start site region 91084	1976 bp upstream