rs253707403 SNP Detail

Summary

• ID
  rs253707403
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:32520855 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTCTTAAAGC TGTTGACAAA CCTGGTCAAC TCAAGCAAGC
  AAGGAAAAAA ATACAGAGGA GTGTCAAGGA GGTGATGTGT CAGGGAAGTG ATGGGTAGTA
  R
  GGCAGAGCTC AAAGGCATCT AAGTTTTCAA ACCTGAAAGC ACAGCAGGTG TTTGGAGTCT
  GAAATGAAAT GAGAAACCCA AAACTCCTGG TCAGGAAGT                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324311972	CHEV_13_32428741	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs253707403					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:32520855 () rs orientation: forward

Symbol	Name	Function Class
A730091E23Rik	RIKEN cDNA A730091E23 gene	1947 bp upstream
Cpgi5422	CpG island 5422	1076 bp proximal
Gmds	GDP-mannose 4, 6-dehydratase	within coordinates
Rr369665	regulatory region 369665	1939 bp upstream
Rr476844	regulatory region 476844	1855 bp proximal
Rr476845	regulatory region 476845	1858 bp proximal
Tssr121995	transcription start site region 121995	1628 bp downstream
Tssr121996	transcription start site region 121996	1682 bp downstream
Tssr121997	transcription start site region 121997	1693 bp downstream