rs253708129 SNP Detail

Summary

• ID
  rs253708129
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:59736327 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    agtgatgat gggtgagtgg ttaaaagtgc
  ttagtacact taatacaccg ggcttcagat cccattacca gcattacaca ggtcattact
  acccatcact cagttacagg ggatttgata ctgtctggcc tttaaaggca cctgcactta
  W
  ctagtgcaca aaaacTCCCT TTGGCTgggg ctagagagat ggctcagtgg ctaagcgcac
  taaactacat ggtagctcaa caaccatctg taatgcaatc tgatgccctc ttctggggtg
  actgaagata acgacagtgt actcatatat                                 
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss319739022	CHEV_1_59754012	CHEVERUD	SCREENING_POP	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs253708129					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:59736327 () rs orientation: forward

Symbol	Name	Function Class
Nop58	NOP58 ribonucleoprotein	within coordinates
Rr371359	regulatory region 371359	within coordinates
Rr411703	regulatory region 411703	494 bp proximal
Tssr6887	transcription start site region 6887	892 bp upstream
Tssr11836	transcription start site region 11836	577 bp downstream