rs253708610 SNP Detail

Summary

• ID
  rs253708610
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:181223316 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTTCCATTC TCCTGAAAGC
  CTCGAAAGTC TCAAAGGCCC CCAAACTCTC GGACAGGTGG CAATCACCAC CCCATCTTAC
  ATTCACAAGC ACCACTGGCC GCCAGGTGCA ACTTTGCGCT CAATTTCGAC GAACTCAGAA
  GGTCGAACAC GCCTACCGCC CAGCTGGGGG CCCAGAGCCA AGTGCGCACC CACTAGGAAC
  W
  GAGACCCACG CTAAAGATGT CAAACAGGTT TCCATTCTCA GTGCCTCCAA AAGCTGGAGC
  TTGGGCCAGT TCCGCCTTCC GTCCGCTGGG GCCCTCCAGG TCGTCTGCCA CCTCCCTCTC
  CCTGGCAGGG GGTGGCTGAC ACATAGCCCA GGAGGCCCCA GGGCGCTGGA GAGCCGCCGA
  AACCTGTCCA GGATCCACAA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss356781075	MGP_WTSI_2_181316228	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs253708610					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss356781075	MGP_WTSI_2_181316228	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:181223316 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12930	CpG island 12930	within coordinates
Rr397593	regulatory region 397593	136 bp downstream
Rr573038	regulatory region 573038	within coordinates
Rr573039	regulatory region 573039	286 bp distal
Rr573040	regulatory region 573040	475 bp proximal
Rr573041	regulatory region 573041	980 bp proximal
Tssr22328	transcription start site region 22328	1998 bp downstream
Tssr22329	transcription start site region 22329	1970 bp downstream
Tssr22330	transcription start site region 22330	1956 bp downstream
Tssr28213	transcription start site region 28213	354 bp upstream
Tssr28214	transcription start site region 28214	377 bp downstream
Tssr28215	transcription start site region 28215	451 bp downstream
Tssr28216	transcription start site region 28216	473 bp downstream
Uckl1	uridine-cytidine kinase 1-like 1	within coordinates
Uckl1os	uridine-cytidine kinase 1-like 1, opposite strand	within coordinates
Zfp512b	zinc finger protein 512B	609 bp downstream