rs253712297 SNP Detail

Summary

• ID
  rs253712297
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:75601047 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACCAAAGGG CGGGGGAGCA
  GACCCGCTTA AGAAACGTGT CAGAGAAGTT TACCGGTTTT TGAGCAGAAA AACCTGATAA
  GGAGAGGTTA GTATTTTGGG AGTTGATGCA ACCCTTTAGG GAGGAGCTCC ACACTGCTGG
  AATCCCTGGT GGCAAAGTAT CCCACAAGAA TGATTTAAAT AACACTAAGG GGCTGCAGAG
  M
  CGTCTTGGCA GTTCAGAGCA CTGGCTTCTC TTCCAGGGGA CCTTGGTTTG AAGACCAGCA
  TTGGCACAGC TCACAACCGG CTGTAATTTC AGTTCAAGAG TTCAAGACGA TCTCCAACGC
  CCTCTTCTGG CTTCTTCTGG AACTGCACAA TGTGGTACAC AGCCATACAT GCAAGCAAAA
  CACTCATACA CATAATTTTT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss380930864	MGP_WTSI_10_75227958	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs253712297					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss380930864	MGP_WTSI_10_75227958	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:75601047 () rs orientation: forward

Symbol	Name	Function Class
Cabin1	calcineurin binding protein 1	872 bp upstream
Cpgi1728	CpG island 1728	496 bp distal
Gm19326	predicted gene, 19326	1948 bp upstream
Gm66464	predicted gene, 66464	within coordinates
Rr401992	regulatory region 401992	667 bp downstream
Rr434120	regulatory region 434120	1818 bp distal
Rr434121	regulatory region 434121	908 bp distal
Rr434122	regulatory region 434122	732 bp distal
Rr434123	regulatory region 434123	within coordinates
Rr434124	regulatory region 434124	114 bp proximal
Rr434125	regulatory region 434125	257 bp proximal
Rr434126	regulatory region 434126	987 bp proximal
Tssr94136	transcription start site region 94136	736 bp downstream
Tssr98119	transcription start site region 98119	975 bp upstream
Tssr98120	transcription start site region 98120	854 bp upstream