rs253718330 SNP Detail

Summary

• ID
  rs253718330
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:89255843 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTACGTGAT GGACAGACAG
  GCTGAGGCCG AGGCAGACAC GTATGTGCAG AGGGGATGGA GCTGAGTGTA GCCGGGGGCT
  TGAAGGAAAG GAGCAGGACC CGGATGGACC TGTTACCCTC AAGATGATTA ATACTGTGGA
  GTGCGAGGAA AGAGAAAATC TTATTAGCAG GCTGTCCCTC ACCTGAAGCA CGTCTGCTAG
  R
  CTCATTGGGG GGCTGTCCTG AACAACCCGG CTCTCCATGG ATCCACTCAG CGTCCTCTCT
  GGGCTGGCTT GCTGCTCTTC CTCAGTGCCT CCTGCAGGGT CCCAGAACAT CCTAAGAGAT
  TGCTGAGGAA ATCCCTAGCA AGGCTGGAAT CACTAGTGTC CTCAGACCCA CCGACCCTCA
  GCACAGAAGG CTATATCAGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss358810977	MGP_WTSI_3_89152458	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs253718330					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss358810977	MGP_WTSI_3_89152458	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:89255843 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
4731419I09Rik	RIKEN cDNA 4731419I09 gene			705 bp downstream
Adam15	ADAM metallopeptidase domain 15			Coding-Synonymous
				Noncoding-Transcript-Variant
Cpgi13424	CpG island 13424			574 bp proximal
Dcst1	DC-STAMP domain containing 1			1683 bp downstream
Gm66683	predicted gene, 66683			1520 bp upstream
Rr397787	regulatory region 397787			1406 bp upstream
Rr580053	regulatory region 580053			183 bp distal
Rr580054	regulatory region 580054			241 bp proximal
Rr580055	regulatory region 580055			1413 bp proximal
Tssr34120	transcription start site region 34120			1403 bp downstream
Tssr34121	transcription start site region 34121			1432 bp downstream