rs253719438 SNP Detail

Summary

• ID
  rs253719438
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:82224550 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCAGC CACCAACCAC CACACTCCCC
  Y
  CTTAAAACAT CCAGCAAAAT GTAGG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325034258	CHEV_15_82170779	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs253719438					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:82224550 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7419	CpG island 7419	1018 bp distal
Cpgi7420	CpG island 7420	392 bp proximal
Naga	N-acetyl galactosaminidase, alpha	1567 bp upstream
Pheta2	PH domain containing endocytic trafficking adaptor 2	within coordinates
Rr506479	regulatory region 506479	1380 bp distal
Rr506480	regulatory region 506480	982 bp distal
Rr506481	regulatory region 506481	1224 bp distal
Rr506482	regulatory region 506482	19 bp proximal
Rr506483	regulatory region 506483	841 bp proximal
Tssr4669	transcription start site region 4669	1474 bp upstream
Tssr132381	transcription start site region 132381	850 bp upstream
Tssr135543	transcription start site region 135543	1558 bp upstream
Tssr135544	transcription start site region 135544	1495 bp upstream
Tssr135545	transcription start site region 135545	1485 bp upstream