rs253725686 SNP Detail

Summary

• ID
  rs253725686
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:43116585 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAAAGAGGA CGAAAGAGAG
  AGAGAGAGAG AGAGAGAGAG AGAGAGGAGC TAATGATTAT GAGTCTCCCA GTCTAGAGTC
  CTATGACATG TGACCAAAAG CGAATGAATG AATGGGGTGA GTGAGATGCT CAGAGGGGAA
  AGGTACTTGC CACCAAGCCT GATGGCCTAG GTTTGATCCT CAGAACCCTG GTAGTGAAAG
  R
  CTAGAACCAA CTCCCAGAAA CCAACTCCCA TGTCCTCTGA TCACTGCATA CTTTCAGTGG
  CAGATGCACA CACAATAATG AAATGTTTTA AAAAGCTGTC AAGAAAATGA ATGAATGAAT
  GAATGAATGA ATGAATGAAC AGATCTTCAT CTGGTCACAG AGGAGGGGGC ATTTGCTACT
  TTTTGCCTTA ACAAAGGACT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss371132515	MGP_WTSI_7_50722531	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs253725686					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss371132515	MGP_WTSI_7_50722531	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:43116585 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18932	CpG island 18932	1150 bp distal
Cpgi18933	CpG island 18933	346 bp distal
Gm39000	predicted gene, 39000	794 bp upstream
Rr400282	regulatory region 400282	1130 bp downstream
Rr645967	regulatory region 645967	1632 bp distal
Rr645968	regulatory region 645968	1059 bp distal
Rr645969	regulatory region 645969	1562 bp distal
Rr645970	regulatory region 645970	870 bp distal
Rr645971	regulatory region 645971	563 bp distal
Tssr66010	transcription start site region 66010	1140 bp downstream
Tssr72135	transcription start site region 72135	1571 bp upstream
Vsig10l	V-set and immunoglobulin domain containing 10 like	within coordinates