rs253732698 SNP Detail

Summary

• ID
  rs253732698
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:141547156 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTACTTTCCT ATGAGAAAGA GCTGTCGAGA GCTGGAAAAA
  TACTCCGGGG TCAGGGTAGT TTTCCTCATG ACCCAAGTGA CATTGTCTAC ATCACTGCCA
  Y
  GGTTGGCCAG GATAAACGTC ATTTAATTCT GTGTGTGTGT GTGTGTGTGT GTATGTGGAT
  GTCAGAAGTC AACCTGTAGT GCACTGGTTC TCAACCTTC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321390087	CHEV_4_141375760	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs253732698					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:141547156 () rs orientation: forward

Symbol	Name	Function Class
Cela2a	chymotrypsin-like elastase family, member 2A	within coordinates
Cpgi15246	CpG island 15246	768 bp distal
D4Mit32	DNA segment, Chr 4, Massachusetts Institute of Technology 32	6 bp proximal
Gm56298	predicted gene, 56298	within coordinates
Tssr40105	transcription start site region 40105	1946 bp downstream
Tssr40106	transcription start site region 40106	1915 bp downstream
Tssr40107	transcription start site region 40107	1863 bp downstream
Tssr40108	transcription start site region 40108	801 bp downstream
Tssr40109	transcription start site region 40109	766 bp downstream
Tssr40110	transcription start site region 40110	743 bp downstream
Tssr40111	transcription start site region 40111	1480 bp upstream
Tssr40112	transcription start site region 40112	1508 bp upstream
Tssr40113	transcription start site region 40113	1537 bp upstream
Tssr40114	transcription start site region 40114	1859 bp upstream
Tssr40115	transcription start site region 40115	1893 bp upstream
Tssr40116	transcription start site region 40116	1933 bp upstream
Tssr44369	transcription start site region 44369	1948 bp upstream
Tssr44370	transcription start site region 44370	1908 bp upstream
Tssr44371	transcription start site region 44371	1877 bp upstream
Tssr44372	transcription start site region 44372	1846 bp upstream
Tssr44373	transcription start site region 44373	1559 bp upstream
Tssr44374	transcription start site region 44374	713 bp upstream
Tssr44375	transcription start site region 44375	480 bp upstream
Tssr44376	transcription start site region 44376	462 bp upstream
Tssr44377	transcription start site region 44377	139 bp downstream
Tssr44378	transcription start site region 44378	258 bp downstream
Tssr44379	transcription start site region 44379	1507 bp downstream
Tssr44380	transcription start site region 44380	1519 bp downstream
Tssr44381	transcription start site region 44381	1875 bp downstream
Tssr44382	transcription start site region 44382	1894 bp downstream
Tssr44383	transcription start site region 44383	1945 bp downstream