rs253735772 SNP Detail

Summary

• ID
  rs253735772
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:46143305 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCAAGCCCTC TACCACCTGA
  GCTGCCTGCC AAGCCCAGAC TGTTCATTGT ATAGACTTGC CCGCTATGGA GTGTAACCAA
  GCACTCATGT TCACAGGGTT GAGGATGTCT GCAGAAGCAC TCTCACACCA ACAGCCTTCC
  TCTCATCTGC CCCTCTTCAT GCCTGTGTTG GTATGCAGGT GGTCTCCATC CATCCCCGGT
  S
  TATCTTCATG AGCCCCTGGC TGAAGGGGTG AGTTTTTAAA TCCACAATCA TGCAGAGCCA
  CAGCAGACAT TAAACCAGGT TTGGGTAGGA AAGTTTCCCG GTGTGGACAA TGAGACTTCT
  GGCTCTTGGT GGACAGGAAG AGAAACCCCT ATTGGATTTC CAGAGAGAAC ATAGTCCAGT
  CTGCTGGCTG TGCCAATGCA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss377451264	MGP_WTSI_9_46040090	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs253735772					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss377451264	MGP_WTSI_9_46040090	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:46143305 () rs orientation: forward

Symbol	Name	Function Class
Apoa1	apolipoprotein A-I	1538 bp downstream
Apoc3	apolipoprotein C-III	1043 bp downstream
Cpgi21701	CpG island 21701	1502 bp distal
D9Mit93	DNA segment, Chr 9, Massachusetts Institute of Technology 93	1348 bp proximal
Rr206362	regulatory region 206362	904 bp distal
Rr206363	regulatory region 206363	1495 bp proximal
Tssr84849	transcription start site region 84849	1985 bp downstream
Tssr84850	transcription start site region 84850	1943 bp downstream
Tssr84851	transcription start site region 84851	1908 bp downstream
Tssr84852	transcription start site region 84852	1811 bp downstream
Tssr84853	transcription start site region 84853	1777 bp downstream
Tssr84854	transcription start site region 84854	1764 bp downstream
Tssr84855	transcription start site region 84855	1744 bp downstream
Tssr84856	transcription start site region 84856	1733 bp downstream
Tssr84857	transcription start site region 84857	1611 bp downstream
Tssr84858	transcription start site region 84858	1574 bp downstream
Tssr84859	transcription start site region 84859	1125 bp upstream
Tssr84860	transcription start site region 84860	1264 bp upstream
Tssr84861	transcription start site region 84861	1310 bp upstream
Tssr89315	transcription start site region 89315	1981 bp upstream
Tssr89316	transcription start site region 89316	1961 bp upstream
Tssr89317	transcription start site region 89317	1952 bp upstream
Tssr89318	transcription start site region 89318	1928 bp upstream
Tssr89319	transcription start site region 89319	1918 bp upstream
Tssr89320	transcription start site region 89320	1905 bp upstream
Tssr89321	transcription start site region 89321	1880 bp upstream
Tssr89322	transcription start site region 89322	1797 bp upstream
Tssr89323	transcription start site region 89323	1745 bp upstream
Tssr89324	transcription start site region 89324	1717 bp upstream
Tssr89325	transcription start site region 89325	1692 bp upstream
Tssr89326	transcription start site region 89326	1658 bp upstream
Tssr89327	transcription start site region 89327	1544 bp upstream
Tssr89328	transcription start site region 89328	1092 bp downstream
Tssr89329	transcription start site region 89329	1163 bp downstream
Tssr89330	transcription start site region 89330	1209 bp downstream
Tssr89331	transcription start site region 89331	1242 bp downstream
Tssr89332	transcription start site region 89332	1317 bp downstream