rs253743788 SNP Detail

Summary

• ID
  rs253743788
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:70356179 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGCGCATGC GCATCCTCGA
  TTTCTGGCGA GAAGGCCCCG GGAGGGGCGC AAAGAGAAGA GAGAGAAGCA TTGCGCCTGC
  GCAGAATGAG CTGTTGCACG GTGGGTTGCC ATGCTACAGA GAAACCGTGG GCCAGCCGTG
  CACGCTAAGT TCCAGGTTGG AACCTGCAAT AAATTCGCTC TTCCTTGCAA CTGGGGTTAG
  S
  GGTGGAACCT TGTCACTGAG CAGGGGGTGG GAAGTTTTCG GCAACTTAGA GAAAGGCGAG
  TATGTGGAAA TTCTACCTTT AGACCTAAAA ACCGGAGTAG GGAGATTCAA ATCCTGATTC
  TTCACGTCCC TAAACTGGAT AAATTCCTAA AAGTTCTATA GTCATCCGCC AGGATCTGAT
  GATACTTGAA TTGGGATCAG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss375092136	MGP_WTSI_8_72427428	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs253743788					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss375092136	MGP_WTSI_8_72427428	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:70356179 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20428	CpG island 20428	within coordinates
Ndufa13	NADH:ubiquinone oxidoreductase subunit A13	971 bp upstream
Rr400887	regulatory region 400887	1698 bp downstream
Rr400888	regulatory region 400888	46 bp downstream
Rr664595	regulatory region 664595	1335 bp distal
Rr664596	regulatory region 664596	327 bp distal
Rr664597	regulatory region 664597	820 bp distal
Rr664598	regulatory region 664598	701 bp distal
Rr664599	regulatory region 664599	674 bp proximal
Tssk6	testis-specific serine kinase 6	11 bp downstream
Tssr2594	transcription start site region 2594	1733 bp downstream
Tssr77689	transcription start site region 77689	1335 bp downstream
Tssr81544	transcription start site region 81544	1872 bp upstream
Tssr81545	transcription start site region 81545	1857 bp upstream
Tssr81546	transcription start site region 81546	1522 bp upstream
Tssr81547	transcription start site region 81547	1505 bp upstream
Tssr81548	transcription start site region 81548	307 bp upstream