rs253751851 SNP Detail

Summary

• ID
  rs253751851
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:117583550 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTCCAGGAT ACCGTTTTTT
  TCTAATTGGC ACTGAAAAGA AGGTCTTTGC ATCAGAGGCA CAAGAGACTC TTTGATGAAT
  TTTCCACAGT TAATTACGTG TGTGTGTGTG TGTGTGTGTG TGTGTGTGTG TGTGTGTGTG
  TGTGTGTGTG TATGGGTGCC TGTGTGACGG TCAGAGGATA ACTCGGAGTC AGTTCTCTCC
  R
  TCCACCAGAT GGACTGAATT CATGCTGTAG GGTTTGGGAA GCAAGCACCT TTACCAGATG
  CCGTCATATC AGCTACGTTC CTCTTTCGTA CCGCATTTTT TTTAGAGAAT TGCCCGTTTA
  CTTAGATGTC TTGTCTTAGT TGGGGAGGAA AGGGTTTGTT TGGCTTACAC GTAGCTGTTT
  ATCACCAAAG GGAGTTAGGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323499191	CHEV_10_117184701	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs253751851					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:117583550 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2238	CpG island 2238	1860 bp distal
Cpgi2239	CpG island 2239	990 bp distal
Gm66856	predicted gene, 66856	within coordinates
Rr439610	regulatory region 439610	1682 bp distal
Rr439611	regulatory region 439611	1154 bp distal
Rr439612	regulatory region 439612	804 bp distal
Slc35e3	solute carrier family 35, member E3	1287 bp upstream
Tssr99471	transcription start site region 99471	1295 bp upstream
Tssr99472	transcription start site region 99472	1227 bp upstream