rs253751871 SNP Detail

Summary

• ID
  rs253751871
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:21901921 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGCAGAAGG ATGCGGGTGT
  TGTATAGGGG CAGCTTTCCT TCTAGCGTGG CCAGGAACTG CGGGGGGGGG GGGTAGGGGG
  AGGCCGGAGA GAGATGTGGG ATGGCAGTGA GGCTCTGTTC CACCTCCGTG CACCTTACAT
  TGAGTTTCTA CCGGATTCTA GGTGGAGATC ACTGCCCACC CTTCGCTGCC TGGTTTCGGA
  K
  GCCCTGCCAC CTGAGATCCA CCCAGTCCAG GCTTCGCTAC TCTGGTTATG AAGCTCACGC
  CCATTCAGCA CCTGTTTCCT ATGTCAGTCT GCTCTCTGAT TTTCGACCCT CCCTCCCCCA
  CCCCCACCCC CACCCCCTGC CTTGGTCCCC ACTGGCCGCG GAGGATGTGT GTGAACCTCT
  CGGTCTGCTA TGTGTCGCAG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss376878310	MGP_WTSI_9_21795069	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	T	G	G	G	G	T	G	G	G	G	T	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs253751871					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	T	G	G	G	G	T	G	G	G	G	T	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss376878310	MGP_WTSI_9_21795069	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:21901921 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21468	CpG island 21468	1075 bp distal
Cpgi21469	CpG island 21469	400 bp distal
Cpgi21470	CpG island 21470	1042 bp proximal
Gm36414	predicted gene, 36414	within coordinates
Odad3	outer dynein arm docking complex subunit 3	within coordinates
Rgl3	ral guanine nucleotide dissociation stimulator-like 3	1156 bp upstream
Rr206074	regulatory region 206074	120 bp distal
Tssr88431	transcription start site region 88431	1201 bp upstream
Tssr88432	transcription start site region 88432	1169 bp upstream
Tssr88433	transcription start site region 88433	1465 bp downstream