rs253755465 SNP Detail

Summary

• ID
  rs253755465
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:8106634 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    gcggcgagc ggcggccccc gcggggcggc
  gTGGTGCGCT CCGGGGCGGC TCTGGGCCGG ACGGGCGGAG CAGCAGACAG GCAGGGCGGA
  GGCGCAGTCT GCACCATGGC GTATCCCGGG CACCCTGGCG CGGGCGGAGG GTACTACCCA
  R
  GCGGGGTAAG TGCAGCGGAC GAGGGCACAG CAGCCTCTGG TCTCCCGAGA CTGGAAGGCG
  CCACGGACGA GCGGGAGGAG GCGTCGCGGG CGGTCCCAGA TGCTCCCTGC GAGCTCGCCT
  GGACCCTGAT GTCCAGCCTT GGCTCCATTT                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321459854	CHEV_5_8056634	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs253755465					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:8106634 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15530	CpG island 15530	within coordinates
Gm15730	predicted gene 15730	1081 bp downstream
Rr607089	regulatory region 607089	97 bp distal
Rr607090	regulatory region 607090	67 bp proximal
Rr607091	regulatory region 607091	1419 bp proximal
Sri	sorcin	within coordinates
Tssr45106	transcription start site region 45106	1520 bp downstream
Tssr45107	transcription start site region 45107	83 bp downstream
Tssr45108	transcription start site region 45108	49 bp downstream