rs253760936 SNP Detail

Summary

• ID
  rs253760936
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:3673562 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTCAACTCT TTGTTGCTAG
  TGCCAAGTGT TTTATTGTTT TCAGGGGCCA GTGGGAGGCC CAGGATGGCT AGAACTCTCA
  AGGAGCTTGT GTCTGGGGCT GGGGGCTGCT GTTCCTGCGG AAGCTGAGTG CAGCAGGATC
  CTGAGGGGTG AGCAGGGGTT GAGGGCTGAG GGTCCCAGGT CGTTTCTGCA TTCCATCCTG
  K
  GGATGAAGAA GGGTCAGACG GAGGGAGGGG ACCAAGGAAA GTGCAAGTCA GAAGTGCCTC
  CAAACAATGT TTTTTTTTCG TCTGCTAATT AGGGTGGTGG TATTTGGTCA GACATTGGCC
  TGTTAGTGTA TACCTGTAAT CCCAGTACTC AAGAAACAGG CAGGAGGATT ATTTTGAGTT
  CAAAGCTAAA TACTAAAACA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss373511983	MGP_WTSI_8_3623562	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	T	G	G	G	G	G	G	G	G	T	G	G	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs253760936					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	T	G	G	G	G	G	G	G	G	T	G	G	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss373511983	MGP_WTSI_8_3623562	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:3673562 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20029	CpG island 20029	1843 bp distal
Pcp2	Purkinje cell protein 2 (L7)	within coordinates
Pet100	PET100 homolog	within coordinates
Rr658949	regulatory region 658949	1950 bp distal
Rr658951	regulatory region 658951	552 bp distal
Tssr76076	transcription start site region 76076	1979 bp downstream
Tssr76077	transcription start site region 76077	1953 bp downstream
Tssr80203	transcription start site region 80203	5 bp upstream
Tssr80204	transcription start site region 80204	1007 bp downstream
Tssr80205	transcription start site region 80205	1097 bp downstream
Tssr80206	transcription start site region 80206	1359 bp downstream
Tssr80207	transcription start site region 80207	1408 bp downstream
Tssr80208	transcription start site region 80208	1427 bp downstream
Tssr80209	transcription start site region 80209	1463 bp downstream
Tssr80210	transcription start site region 80210	1644 bp downstream
Tssr80211	transcription start site region 80211	1684 bp downstream
Tssr80212	transcription start site region 80212	1712 bp downstream
Tssr80213	transcription start site region 80213	1727 bp downstream
Tssr80214	transcription start site region 80214	1979 bp downstream