rs253766249 SNP Detail

Summary

• ID
  rs253766249
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:15538360 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGGGGGTGG GGGTGGGGGT
  GGGGGTGGGG TGGGGGTGGG GTTTCTTTGC CTTGATGAAA CCAGCAAGCA TACCTCCTTA
  ACTCAGCTAG GCAGCTAGGT GTCAGTTGCC TAATTTGTGC AAAAGTTCCT AATTCCTGGT
  TTGAGAAGTG ATATCTAGAA GCCCTCACAG TTTGCATCTT AGTGGAGTGC CTATCCTTTG
  S
  CTTTGAGTGT ATTCTTTCAT TGGTTTTTCT TGACCTTTTA AAAGAGTCGA TTGAGCATGA
  AATTTAGTAC GAAGTCCAAA AACAGGAGCT GGAGAACTGG CCCAGCAGTT GGAGGTCATC
  ATGCTTAGAG TGCATAGAGA GGACCCAGCA CCGGTCAGGT AGCTCAAAAC CACCTAGTCC
  CAGGGCAATC AGATGCCCTC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss376737692	MGP_WTSI_9_15431508	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	G	C	C	C	C	G	C	C	C	C	C	G	C	C	C	C	G	C	G	C	C	C	C	C	C	C	C	C	C	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs253766249					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	G	C	C	C	C	G	C	C	C	C	C	G	C	C	C	C	G	C	G	C	C	C	C	C	C	C	C	C	C	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss376737692	MGP_WTSI_9_15431508	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:15538360 () rs orientation: forward

Symbol	Name	Function Class
4930540M03Rik	RIKEN cDNA 4930540M03 gene	within coordinates
Cpgi21372	CpG island 21372	657 bp proximal
Deup1	deuterosome assembly protein 1	within coordinates
Rr674358	regulatory region 674358	579 bp proximal
Rr674359	regulatory region 674359	829 bp proximal
Rr674360	regulatory region 674360	882 bp proximal
Tssr83870	transcription start site region 83870	861 bp upstream
Tssr88249	transcription start site region 88249	756 bp downstream
Tssr88250	transcription start site region 88250	776 bp downstream
Tssr88251	transcription start site region 88251	806 bp downstream
Tssr88252	transcription start site region 88252	833 bp downstream
Tssr88253	transcription start site region 88253	846 bp downstream
Tssr88254	transcription start site region 88254	1219 bp downstream
Tssr88255	transcription start site region 88255	1262 bp downstream