rs253769226 SNP Detail

Summary

• ID
  rs253769226
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:110805689 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGTCTGCCT AGCTCCGTGC
  CTGGCTGCAA TGTCCTCCAC CTCCAGAGCG GATGCTCTTA ACTTTACCCT GGGACACCTT
  GCCACTCACT ATGCAAATGA CTTACAAGGC AAAGGAGGAG GACAGGAAAA CTGGCTAAAC
  CTGGGTGTTA CCAAAACTTT GGCCACAATC CACTTTCTGG AGGCCTAGGG TGGTGATGGT
  R
  CACGCCTTTA ATTCCAGCAC TTGAGAGGCA GAAACAGGCT AATCTCTGAA TTCTAGGCCA
  GCCTGGTCCA CAGAGCTAGT TCTAGGGTAG CTTTGGCTAC AAAGGGAAAC CCTGTCTTGA
  AAAACCAAAA TGAGCCGGGC GGTGGTGGCG CATGCATTTA ATCCCAGCAC TTGGGATGCA
  GGGGCAGGCA GATTTCTGAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss387344417	MGP_WTSI_12_112077465	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs253769226					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss387344417	MGP_WTSI_12_112077465	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:110805689 () rs orientation: forward

Symbol	Name	Function Class
4921507G05Rik	RIKEN cDNA 4921507G05 gene	1774 bp upstream
Cpgi5123	CpG island 5123	1135 bp proximal
Mok	MOK protein kinase	within coordinates
Rr387788	regulatory region 387788	950 bp downstream
Rr403503	regulatory region 403503	1579 bp upstream
Rr473004	regulatory region 473004	1232 bp distal
Rr473005	regulatory region 473005	1036 bp distal
Rr473006	regulatory region 473006	753 bp distal
Rr473007	regulatory region 473007	1037 bp proximal
Rr473008	regulatory region 473008	1662 bp proximal
Rr473009	regulatory region 473009	1792 bp proximal
Tssr115236	transcription start site region 115236	1766 bp upstream
Tssr117795	transcription start site region 117795	159 bp upstream
Tssr117796	transcription start site region 117796	1595 bp downstream
Tssr117797	transcription start site region 117797	1650 bp downstream