rs253788666 SNP Detail

Summary

• ID
  rs253788666
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:64082764 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAGGGTGCC TTTGGAAATG
  TATCCTTGAT TAGTGCTCTT GGCAACTGAC CAACTGGACT TAGGCTAATT AATATTTGAA
  TCATGTTTAA ACATACTAGA GTCTCTCTAG ACAAAAATCT GGAGATGTTT GGCTGGGAAC
  TTGCAGTGAT GTCGTAATTT GCGTCTTACT CTGTTCACAG CGACAGTTGC CTGCTGTCAG
  Y
  ATGCTGGTTC AGAAGGTTGA CGAACATTGT TACTGAGCAA GTAGTAATCT TGTTAATTTT
  CTAAATTTGA AAAAGATGTT AATTCTTGAC AAAGAAAACA GATGTGTCGT GGGGGACGCA
  TGTTTGCACC AACCAAAACC TGGCGTCGTT GGCACCGCAG AGTGAATACA ACCCAAAAAC
  GATATGCCAT CTGTTCTGCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss377838339	MGP_WTSI_9_64023289	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs253788666					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss377838339	MGP_WTSI_9_64023289	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:64082764 () rs orientation: forward

Symbol	Name	Function Class
Gm22455	predicted gene, 22455	1641 bp upstream
Gm22571	predicted gene, 22571	391 bp upstream
Gm23136	predicted gene, 23136	1179 bp upstream
Gm23344	predicted gene, 23344	367 bp downstream
Rpl4	ribosomal protein L4	within coordinates
Rr368800	regulatory region 368800	1289 bp downstream
Snord16a	small nucleolar RNA, C/D box 16A	within coordinates
Tssr85597	transcription start site region 85597	510 bp downstream
Tssr85598	transcription start site region 85598	56 bp downstream
Tssr85599	transcription start site region 85599	106 bp upstream
Tssr85600	transcription start site region 85600	1487 bp upstream
Tssr85601	transcription start site region 85601	1892 bp upstream
Tssr85602	transcription start site region 85602	1959 bp upstream