rs253789555 SNP Detail

Summary

• ID
  rs253789555
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:152100070 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACACACACAC ACACACACAC
  GGATGGAGGG AAGGGCAGGG AGAGTATTGT AGATCAGCCT TGACTATAGA AGCTTGCCTC
  AGCGAAAACA AGCTTCAAAT CGCAATGCCT GTTTTGCCAA CAAATGTTAG CAAGGCCATG
  GGTTGGGTTT CTCTCTTATG TTTACATATT AGTGCCGGGT GGTGGTGGTG CACGCCTTTA
  M
  TCCCAGCACT CGGGAGGCAG AGGCAGGCAG ATTTTTGATT TTGAGGCCAG CCTGGTCTAC
  AAAGTGAGTT CCAGGCCAGC ATGGGCTACA CAGAGAAACC CTCTCTCGAA AAACCAACAA
  AACAAAACGT TTGCGTATTA GTGCGGTGGT ACCATTCCCA CGGAAGAGAA AGGGAAAGTA
  AACCTGTGGG GACCTTTATC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss360265552	MGP_WTSI_3_152057397	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs253789555					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss360265552	MGP_WTSI_3_152057397	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:152100070 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13949	CpG island 13949	134 bp proximal
Cpgi13950	CpG island 13950	862 bp proximal
Gm43857	predicted gene 43857	193 bp upstream
Gm66519	predicted gene, 66519	within coordinates
Rr587540	regulatory region 587540	686 bp distal
Rr587541	regulatory region 587541	599 bp distal
Rr587542	regulatory region 587542	234 bp proximal
Rr587543	regulatory region 587543	1080 bp proximal
Rr587544	regulatory region 587544	1468 bp proximal
Rr587545	regulatory region 587545	1528 bp proximal
Rr587546	regulatory region 587546	1617 bp proximal
Rr587547	regulatory region 587547	1761 bp proximal
Rr587548	regulatory region 587548	1807 bp proximal
Rr587549	regulatory region 587549	1842 bp proximal
Tssr32410	transcription start site region 32410	1011 bp upstream
Tssr32411	transcription start site region 32411	1558 bp upstream
Tssr32412	transcription start site region 32412	1628 bp upstream
Tssr32413	transcription start site region 32413	1929 bp upstream
Usp33	ubiquitin specific peptidase 33	816 bp downstream
Zzz3	zinc finger, ZZ domain containing 3	1040 bp upstream