rs253789945 SNP Detail

Summary

• ID
  rs253789945
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:69816395 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCGTGAAGCA CCGTGTGGTC
  GCAGTACTCG AACACCAGGT GAAGCCTCCG CTTCCTCCGG AAGACTTCCA GGAGGTTGAC
  CAGGTTGGGG TGCTTGAGTT GCTGAAATCA GAAGAGGCAG GGTGGTGAAT ATGGGCTGTG
  AGAGTCTTTC TCTGGGTTCC AGCCAGTAGA AATAAAGGTG TCCCCCCTTC ATGAGGTTCA
  Y
  TCTCTGTGTG GAAGGAGTCT GAAATCATCG CCACCTGAGC TCTCTTCACA GGCTGTCTGT
  CAGCGACTTA GAGACCAGGG CCTGGGTACT TTGTGACAGC AGAGTTCTGA GAAGACTGGC
  TAGGGTGAGG AAATGCTGAC GGGGTTGAGT TAGACGAGCT CAGCCTTCAA GGCTCTAGTT
  AAGTATCCTT TCCTGAAGAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324085535	CHEV_12_70870608	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs253789945					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:69816395 () rs orientation: forward

Symbol	Name	Function Class
Cdkl1	cyclin dependent kinase like 1	within coordinates
Rr467133	regulatory region 467133	1830 bp distal
Tssr116525	transcription start site region 116525	314 bp upstream
Tssr116526	transcription start site region 116526	112 bp downstream