rs253790039 SNP Detail

Summary

• ID
  rs253790039
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:155868068 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATTTATGCG TAAGTAGGAA
  CATGTTAGTC AAACTGTAGC ATGCCAAATA CAAAGATAAA TCTTAACATT ACCCACATTG
  TAAAATGAGC TCGTATTCTG CCACTTGTCT CAAAAGAAAG ACCCCTGGTC AGAGAATGAG
  CTCCAGTTCT AGATATGCGC TGATACCTGA CCCCGAATGC AAGCTGAGTG CTAGGAGCTG
  K
  AGAGATGGCT CAGGGTCCTT TAGAAGACAG CTGGCTGCTC TTCCAGAGGA CCCAGGTTGC
  AGTCCTAGAA CCCACATTGC AGCTCGCACC TGCCGGTAAC TGCAGTTCGA GGGCTTGTGA
  CACCCCCACA TAGATACACA TGCAGGCAAA ACATCAATAC ACACACGCAC AAAAATAAAT
  AAATAAAAAT AAATTACATA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss363803022	MGP_WTSI_4_155157720	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs253790039					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss363803022	MGP_WTSI_4_155157720	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:155868068 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15485	CpG island 15485	404 bp proximal
Rr606569	regulatory region 606569	534 bp proximal
Rr606570	regulatory region 606570	1034 bp proximal
Tmem278	transmembrane protein 278	within coordinates
Tssr44971	transcription start site region 44971	411 bp downstream
Tssr44972	transcription start site region 44972	1287 bp downstream
Tssr44973	transcription start site region 44973	1325 bp downstream
Tssr44974	transcription start site region 44974	1397 bp downstream
Tssr44975	transcription start site region 44975	1411 bp downstream
Tssr44976	transcription start site region 44976	1438 bp downstream
Tssr44977	transcription start site region 44977	1448 bp downstream