rs253790123 SNP Detail

Summary

• ID
  rs253790123
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:132459043 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTGAGCTGT ACTCAAGATG
  ATACAATTGT TCAGGCAAAA TGCAAACATT CAAGAGGTCC CTCCCCGCAA GCTGGAGACT
  ATATACAGCT TTCCCAAGAT CTGAGACTTC CACAAGATTC CGGATCCGGC CACCCTAGCC
  CAGCCTCACC CACACCATGA AGCCCTGCCT TCATCACAAG ATTCTGAGCC CTTGATTTCG
  M
  TTTCTCCTAT CTAACAACCC AAGGGACTAG TCACAGTTTG GGGGCGGGGG AGAGGCGGGG
  AAGAAAAAGT TCTCAGGCCA GCACTTGCGC CAGGGATTGT CTGTCTCACT GTCCTCACTT
  TAGACTGACC CTGGGTCCTT CCCAGTTGAG AAAAGCACAC ACCATCCACA TATATTTTCC
  AAGAACCAGT CTATGTCTAC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss363300651	MGP_WTSI_4_132287647	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs253790123					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss363300651	MGP_WTSI_4_132287647	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:132459043 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi14969	CpG island 14969			469 bp proximal
Cpgi14970	CpG island 14970			1725 bp proximal
Rr398540	regulatory region 398540			825 bp upstream
Rr601049	regulatory region 601049			702 bp proximal
Rr601050	regulatory region 601050			787 bp proximal
Rr601051	regulatory region 601051			804 bp proximal
Smpdl3b	sphingomyelin phosphodiesterase, acid-like 3B			1234 bp downstream
Tssr39417	transcription start site region 39417			94 bp upstream
Tssr43695	transcription start site region 43695			11 bp upstream
Tssr43696	transcription start site region 43696			695 bp downstream
Tssr43697	transcription start site region 43697			782 bp downstream
Tssr43698	transcription start site region 43698			833 bp downstream
Xkr8	X-linked Kx blood group related 8			Intron
				Noncoding-Transcript-Variant