rs253790443 SNP Detail

Summary

• ID
  rs253790443
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:129954924 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTATTAAAAA TAATGGTTTC
  ATGAAATTCT TAGGCAAATA GATGGAACTA GAAAATATCA TCCTGAGTGA GGTAACCTAG
  ACACAAAAGA ATAGTAGGCA TTCACTGATA AGTGGATATT AGCCCAAAAG CTCAGAATAC
  CCAAGATACA ATTCACATAC CATATGAAGC TCAAGAAAAA GGAAGAACAA AGTGTGGATG
  T
  TTCAGTCCTT CTTAGAAGGG GGAATAAAAT ACTCAATGTG GGTAGAGGGT AGGACAGACC
  AGGGAGGAAG AGAGGAGGAG GGGAGAAAAG TGGGGCAGGA TCACGTATTC AAGGAGACAG
  GGATGATATA CAAATGGTCA GGAATTTGAA CAGAGGTGTG TAGCAATGGG GGATATGGAA
  ATGGAGTTAG CCACCAGCAA                                            
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323544180	CHEV_10_129556111	CHEVERUD	SCREENING_POP	f	SNP	T	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs253790443					SNP	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:129954924 () rs orientation: forward

Symbol	Name	Function Class
Gm5181	predicted gene 5181	1184 bp upstream
Rr385500	regulatory region 385500	902 bp downstream