rs253794833 SNP Detail

Summary

• ID
  rs253794833
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:83467797 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAAAAACCA TCAGGGATGT
  TGAGTGACAT CCAGCAATGT ATCACTTTTT AAAATCCATA ATAATCCTTT ATCCCAAATA
  TATCGAAGCC CAAAGATTGT TGCTAAAGGA TTGGGAATTT GCATTGTGCT AAGACAAGAC
  TACTAATCCC TTATATCATG TCTTCAATGG TTGCATATGA ATTATCTGTA GTAGGGTGCA
  Y
  GGCTATTATT TAACAAGTTT GATGTGGTGT GGGTGGCTTC CAAAGTAAAT CTTAAGAAGC
  AGTGCCTGTT CTTGAACGCA TGATTACTAA TCTGCCTCTT AGTCTTACCC ATCACTACTC
  ATGCGGTCTT ACATTATTGA AGGCTGTTCC AATTCTCTGT TTCAGTTATC TGGTTTGAAA
  AGTGAGCAGG GCAATAATAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss384072557	MGP_WTSI_11_83390473	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs253794833					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss384072557	MGP_WTSI_11_83390473	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:83467797 () rs orientation: forward

Symbol	Name	Function Class
Ccl9	C-C motif chemokine ligand 9	within coordinates
Tssr103716	transcription start site region 103716	1605 bp downstream
Tssr109682	transcription start site region 109682	1977 bp upstream
Tssr109683	transcription start site region 109683	1929 bp upstream
Tssr109684	transcription start site region 109684	1903 bp upstream
Tssr109685	transcription start site region 109685	1862 bp upstream
Tssr109686	transcription start site region 109686	1793 bp upstream
Tssr109687	transcription start site region 109687	1739 bp upstream
Tssr109688	transcription start site region 109688	1698 bp upstream
Tssr109689	transcription start site region 109689	1656 bp upstream
Tssr109690	transcription start site region 109690	1647 bp upstream
Tssr109691	transcription start site region 109691	1633 bp upstream
Tssr109692	transcription start site region 109692	1605 bp upstream
Tssr109693	transcription start site region 109693	1488 bp upstream
Tssr109694	transcription start site region 109694	1061 bp upstream
Tssr109695	transcription start site region 109695	1013 bp upstream
Tssr109696	transcription start site region 109696	17 bp upstream
Tssr109697	transcription start site region 109697	166 bp downstream
Tssr109698	transcription start site region 109698	1449 bp downstream
Tssr109699	transcription start site region 109699	1496 bp downstream
Tssr109700	transcription start site region 109700	1525 bp downstream
Tssr109701	transcription start site region 109701	1558 bp downstream
Tssr109702	transcription start site region 109702	1615 bp downstream
Tssr109703	transcription start site region 109703	1625 bp downstream
Tssr109704	transcription start site region 109704	1649 bp downstream