rs253798424 SNP Detail

Summary

• ID
  rs253798424
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:49024604 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACAGCAGCG GAGGAGGACG
  GGGCATTTAG CAGATTAGGA AAGAACCAGC ACCCAGTGTT CTGGGTTAGG GTGAGGCTCA
  TCTGGACTCC AGCAGAGCTT AGCTATTTAC TTCTGTGCTG TGCTGGCCCA CGTGTTGGCA
  GCTGGGAGAC GCTAAGGCTT ACCTATGAGG AGGTCTAGTT TTAGTCTTCA GGCAGAGGGC
  R
  TCTCTGCAGC ACTCCCTCAC AGGCGAGCCA CCTATTTTCT TTTCTTCTTG TGTTGTATCT
  TCTAGATCAG ATCCCTGTAT TCGTGACCAT GTCCCAGAAG AATGACAGGA ACTTGTCTGA
  TGAGATCTTC CTCAGAGACC TCCCCATCGT CTTCGATGTC CTCATTCATG ATCCCAGCCA
  CTTCCTCAAC GACTCTGCCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss368235224	MGP_WTSI_6_48997669	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	A	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs253798424					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	A	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss368235224	MGP_WTSI_6_48997669	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:49024604 () rs orientation: forward

Symbol	Name	Function Class
D6Dcr8	DNA Segment, Chr 6, Derry C. Roopenian 8	1220 bp distal
D6Mit142	DNA segment, Chr 6, Massachusetts Institute of Technology 142	1232 bp distal
Gm56981	predicted gene, 56981	within coordinates
Gpnmb	glycoprotein (transmembrane) nmb	within coordinates
Tssr56327	transcription start site region 56327	1990 bp downstream
Tssr56328	transcription start site region 56328	1912 bp downstream
Tssr56329	transcription start site region 56329	1836 bp downstream
Tssr56330	transcription start site region 56330	1665 bp downstream
Tssr56331	transcription start site region 56331	1620 bp downstream
Tssr56332	transcription start site region 56332	1547 bp downstream
Tssr56333	transcription start site region 56333	1509 bp downstream
Tssr56334	transcription start site region 56334	1499 bp downstream
Tssr56335	transcription start site region 56335	1479 bp downstream
Tssr56336	transcription start site region 56336	1452 bp downstream
Tssr56337	transcription start site region 56337	1429 bp downstream
Tssr56338	transcription start site region 56338	1413 bp downstream
Tssr56339	transcription start site region 56339	1399 bp downstream
Tssr56340	transcription start site region 56340	1209 bp downstream
Tssr56341	transcription start site region 56341	949 bp downstream
Tssr56342	transcription start site region 56342	917 bp downstream
Tssr56343	transcription start site region 56343	371 bp downstream
Tssr56344	transcription start site region 56344	347 bp downstream
Tssr56345	transcription start site region 56345	328 bp downstream
Tssr56346	transcription start site region 56346	275 bp downstream
Tssr56347	transcription start site region 56347	257 bp downstream
Tssr56348	transcription start site region 56348	234 bp downstream
Tssr56349	transcription start site region 56349	78 bp upstream
Tssr56350	transcription start site region 56350	105 bp upstream
Tssr56351	transcription start site region 56351	135 bp upstream
Tssr56352	transcription start site region 56352	148 bp upstream
Tssr56353	transcription start site region 56353	217 bp upstream
Tssr56354	transcription start site region 56354	232 bp upstream
Tssr56355	transcription start site region 56355	257 bp upstream
Tssr56356	transcription start site region 56356	275 bp upstream
Tssr56357	transcription start site region 56357	287 bp upstream
Tssr56358	transcription start site region 56358	305 bp upstream
Tssr56359	transcription start site region 56359	320 bp upstream
Tssr56360	transcription start site region 56360	357 bp upstream
Tssr60848	transcription start site region 60848	1262 bp upstream
Tssr60849	transcription start site region 60849	308 bp upstream
Tssr60850	transcription start site region 60850	255 bp upstream
Tssr60851	transcription start site region 60851	184 bp downstream
Tssr60852	transcription start site region 60852	227 bp downstream
Tssr60853	transcription start site region 60853	237 bp downstream
Tssr60854	transcription start site region 60854	256 bp downstream
Tssr60855	transcription start site region 60855	289 bp downstream
Tssr60856	transcription start site region 60856	327 bp downstream
Tssr60857	transcription start site region 60857	356 bp downstream