rs253799553 SNP Detail

Summary

• ID
  rs253799553
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:184822721 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCAAAACAAA ACTCCAACCT
  GGGAGCTGAA GCAATGGCTC AGTGGTTAAG AGCCTTTCCT GCTCTTCTAG AGGACCCAGG
  ACCATGTGTA ACTCTAGTCA CAGGAAATCT GACACCTTTT CTGGCCTTCT TCAGCACCAG
  GCACAAGTAT ATAGATGTTC ATGTGTATAA AACACCCATA TGCACTAAAT AAATAAATTT
  W
  AAAAACCAAC ACACACAAAT CCTCAAGGTT GTGCGTGAAC ACCAATAATT TCAGCACTCG
  GGAGTCATTG GTTCTGGGTT AGCCTGAGTT ACACAGTGAG ATTCTCTCTC AACATAAACA
  AACATTTGTG TTGGGTTTTC CTCGTGTAAT TGACTTCATT TATTGCACCT TCGTTCACTG
  CAGTCCCCTA TGACTCCTTT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320172317	CHEV_1_186914403	CHEVERUD	SCREENING_POP	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs253799553					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:184822721 () rs orientation: forward

Symbol	Name	Function Class
4930433J02Rik	RIKEN cDNA 4930433J02 gene	within coordinates
Gm37662	predicted gene, 37662	within coordinates
Rr372582	regulatory region 372582	573 bp upstream
Rr425334	regulatory region 425334	1312 bp proximal