rs253800905 SNP Detail

Summary

• ID
  rs253800905
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:70313804 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCCCACTGC GCAACTAGCT
  AATCCGCTAC ACATTCCCGG GCCACTGCGC TCAACTGAGA GTCAGCGCGG GGTCAGGAAC
  CCCAAGGGAG GGGCCGGGGC TGCGGGCGGT GAATCAGAAT GATGTCCGCA CGAAAGTTCT
  AAGTGTCCAA GAATAAGAAG CCTTAGGACA TTAGAACCCC TTCCCCAAAG GAAAATACTT
  Y
  ATCTCTCCAT CTGAATCCAG TCAAGGATAA GAAGGAAAGA CAGAAGTTGT GTGGGGGAGC
  CTGGCTTGAA GCGGTCACCT CTCCCATTCC TAGACTGCTA AGGAACCTGT GTCCTGGTGT
  ACTGAACTCT TTCTAAATGC TGGGAGTGCT GGAGACCAAT TGCAAACAAC TCCACTCCTC
  CAACGACTAA ATTCTGTCTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss391459040	MGP_WTSI_14_70476162	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs253800905					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss391459040	MGP_WTSI_14_70476162	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:70313804 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6680	CpG island 6680	155 bp distal
Cpgi6681	CpG island 6681	257 bp proximal
Egr3	early growth response 3	962 bp upstream
Gm63137	predicted gene, 63137	629 bp downstream
Rr404186	regulatory region 404186	385 bp upstream
Rr494833	regulatory region 494833	1237 bp distal
Rr494834	regulatory region 494834	1497 bp distal
Rr494835	regulatory region 494835	643 bp distal
Rr494836	regulatory region 494836	358 bp proximal
Tssr126385	transcription start site region 126385	1188 bp downstream
Tssr126386	transcription start site region 126386	1156 bp downstream
Tssr126387	transcription start site region 126387	552 bp upstream
Tssr126388	transcription start site region 126388	571 bp upstream
Tssr126389	transcription start site region 126389	813 bp upstream
Tssr126390	transcription start site region 126390	851 bp upstream
Tssr126391	transcription start site region 126391	951 bp upstream
Tssr126392	transcription start site region 126392	1020 bp upstream
Tssr126393	transcription start site region 126393	1654 bp upstream