rs253806396 SNP Detail

Summary

• ID
  rs253806396
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:36650019 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGGGATCTG ATGCCCCCTC
  TGGCCTCCAC CAGCAGTGCA TGCACATGGT ACACAGACCC ACAAGCAGGC AAAACACATA
  CACATAAATA AAAAAATGTT TAAAAACTCA AAAAATTAAA AGAAAAGTTC TTAAAACGTA
  GTTAAACGTG AAGGCTACGA GGTAGGAACA ATTATTTTAA AAATCATTTA AAGATTAGTA
  Y
  CCAGGGCTGA AAAGATGGTT AAGGGTACAA ACTGCTCTTG AAGAGGACCC AGGTTTAGTT
  CCTAGCACCC ATGTTCAGTG GTCCAGAGCC GCGTGAAACC CCAGTTCCAA GGAATGCAGT
  GCCTCTGGCC TCCTGGGCAC ATGTACACTT ATTTTTTTTA ACAATTCTTA AGAAATGAAA
  ATAAAATTAA TATTTAGTCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322169166	CHEV_7_37735613	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs253806396					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:36650019 () rs orientation: forward

Symbol	Name	Function Class
Gm72473	predicted gene, 72473	1022 bp upstream
Rr170674	regulatory region 170674	420 bp distal