rs253807437 SNP Detail

Summary

• ID
  rs253807437
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:170417652 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCCTT GCATGTGTGT GTTTGTTTTG
  T
  TTTTGTTTGG GGAGCCCGAG AGAAG                                      
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320111484	CHEV_1_172520214	CHEVERUD	SCREENING_POP	f	SNP	T	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs253807437					SNP	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:170417652 () rs orientation: forward

Symbol	Name	Function Class
Cpgi994	CpG island 994	within coordinates
Nos1ap	nitric oxide synthase 1 (neuronal) adaptor protein	281 bp upstream
Rr423086	regulatory region 423086	233 bp distal
Rr423087	regulatory region 423087	within coordinates
Tssr14920	transcription start site region 14920	314 bp upstream
Tssr14921	transcription start site region 14921	229 bp upstream