rs253809320 SNP Detail

Summary

• ID
  rs253809320
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:117157980 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCTTTTGGT GCTCGCCCTC
  AGCTCTCACC AGCATGGGAG TTAGTTCCCC TCCTCGGATC CAGTGGGAGG CCGAATCCTC
  AGGGTGGACC TCCTCCCCTC CCCCACGCCA GCTCCGGGGT TGGGGCTGAG CCCAGTCCCG
  GGGCTGGCAA GGGCTGCCAA ATTGATCGGC CCGCAGGCCC CATGCACCCG AGGGGATCCC
  R
  GCCCGGCGAG TCTCAGGGTC CAGGGTGGGA TGTCCAATAC CCCCGATCCA GGCCTGGGAC
  ACCTTTATCC ATCAGAGAGA GAAGAGCCTT TTGGGAGAGA GGGGGCCTGT GCGCTCACAC
  AAGGACAGCA CTTTCGCCTC TTGTCCTGAG TTTACAAAGT GCAAAGATAC TTGGGGGCCG
  TTTCCTCCAA GGGTGGGCCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss384872426	MGP_WTSI_11_117128468	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs253809320					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss384872426	MGP_WTSI_11_117128468	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:117157980 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4205	CpG island 4205	382 bp distal
Cpgi4206	CpG island 4206	within coordinates
Gm39478	predicted gene, 39478	1111 bp upstream
Rr246205	regulatory region 246205	within coordinates
Rr369453	regulatory region 369453	1298 bp downstream
Septin9	septin 9	within coordinates
Tssr106035	transcription start site region 106035	965 bp downstream
Tssr106036	transcription start site region 106036	888 bp downstream
Tssr106037	transcription start site region 106037	856 bp downstream
Tssr106038	transcription start site region 106038	682 bp downstream
Tssr112021	transcription start site region 112021	1154 bp upstream
Tssr112022	transcription start site region 112022	1100 bp upstream
Tssr112023	transcription start site region 112023	344 bp downstream