rs253819299 SNP Detail

Summary

• ID
  rs253819299
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:108136177 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGGATTAAA GGCATGTGCC
  ACCACTGCCA GGCCTCTTTT ATTTCTTGAA CCTTCCATAA AATGAGCCTA TTGTCACCTG
  CCATTCCAGT ACATTAATGC CTTCTTCATC AAGGCTATAA ATCCTAGCAC TCAGCAAAGG
  CATGCCTAAG CGACAGACTG AATGCCATGC TAACCTGAGC TACTGTGAGA CTTGGGGGGG
  S
  GGGGGGGGAG TTATGGAAGC CAGTCACGAT GGTACAGACT CCTAATTCTA CTGCTCCAGA
  TACTGACATG GGAGGACTGC AAGTCTGCAG CTAGCTTGAG CTAGTAAGAG TTTGCCTCAA
  AAAAACAAAA CTGGGGGATA AGAGGTAGCA ATGTAGTTGG GGTAGCTCAA GGTAAAGTCC
  CTGCCTAGGA TGAACAAGTG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	BALB/cByJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C58/J	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	JF1/MsJ	LP/J	MA/MyJ	NON/ShiLtJ	NZW/LacJ	PL/J	QSi5/Ianm	RIIIS/J	SPRET/EiJ	SWR/J
ss378863520	MGP_WTSI_9_108161309	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	BALB/cByJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C58/J	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	JF1/MsJ	LP/J	MA/MyJ	NON/ShiLtJ	NZW/LacJ	PL/J	QSi5/Ianm	RIIIS/J	SPRET/EiJ	SWR/J
rs253819299					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss378863520	MGP_WTSI_9_108161309	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:108136177 () rs orientation: forward

Symbol	Name	Function Class
Dag1	dystroglycan 1	within coordinates