rs253819528 SNP Detail

Summary

• ID
  rs253819528
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:30806484 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCTAAGGCC CAGGCATCAC
  AAAGCTGAGA AAGTTAATGT GGTCTCCTCC ATTGTTGGCA GAAAGGCCTA GCTTTAACTT
  GACAGTTGTT TGTCAGTTTA TCTGCCTCTG CCTCTGCCTC TGCCTCAGGG CAAGGCCTTT
  CTTTATCTAT TTGCATCCAA AATCCTCAGT GTGCATCATC TGTCCTTTGT CCAGTGTGCG
  K
  GTGGGCAGCA GCGAACAATG CCCCTCTCCA AGTCTAGCCT CAGTTTCTTA CTGGGCCTGG
  CTAGGAAAGA AAGTTGGTGT GGCGGCTCCC AGTGAAAGGC CTCCAGGCTT GTGCTCTGGC
  TTTCCTGGGC CTCTGTGCAT TGAGAAGCTG GCTGTGAGCC TCGTGTAGCC ATTTCATATT
  TACTTCTCAG GATTCTTGGA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss364425597	MGP_WTSI_5_30951513	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs253819528					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss364425597	MGP_WTSI_5_30951513	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:30806484 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15682	CpG island 15682	771 bp distal
D5Mit389	DNA Segment, Chr 5 Massachusetts Institute of Technology 389	1846 bp distal
Del(5D5Mit348-D5Mit389)6Jcs	deletion, Chr 5, John C. Schimenti 6	1846 bp distal
Mir5625	microRNA 5625	1125 bp downstream
Rr609028	regulatory region 609028	1189 bp distal
Rr609029	regulatory region 609029	461 bp proximal
Rr609030	regulatory region 609030	1588 bp proximal
Slc35f6	solute carrier family 35, member F6	within coordinates
Tssr45603	transcription start site region 45603	1208 bp downstream
Tssr45604	transcription start site region 45604	1142 bp downstream
Tssr45605	transcription start site region 45605	1111 bp downstream