rs253820220 SNP Detail

Summary

• ID
  rs253820220
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:149984271 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAACAGTTGC CTAATGCTTA
  GGAGGCCCTG GGTTCTAGCT TCAACACTGA ACAAGAAAAA TCTAGGTTGT CCCTTAATGA
  AATGGTTCTG CTCTTGCTTA CATGGGTTCT AACAAGAGTC AGAACTTATT ACCTCAGTTG
  CTGAAGAACT GTTAAAATAT GTGCTATGTA CTACAGAGAC ATCAAAAGCA TGTTTAAAAA
  R
  AAAAAAGAAA AACATGTTAA GCAGGGTGTG GTGGCACACA CCTTTAATCC CAGCACTCAG
  GAGGCAGAGG CAGGTGGATT TCTGAGTTCG AGGCCAGCCT GATCTACAAA GTGAGTTCCA
  GGACAGCCAG GGCTATACAG AGAAACCCTG TCTTGAAAAT CCCAAAAACA ACAAAACAAA
  ACAAAACAAA ACAAAACAAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss351888806	MGP_WTSI_1_151955650	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs253820220					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss351888806	MGP_WTSI_1_151955650	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:149984271 () rs orientation: forward

Symbol	Name	Function Class
Ptgs2	prostaglandin-endoperoxide synthase 2	293 bp downstream
Tssr9288	transcription start site region 9288	1921 bp downstream
Tssr9289	transcription start site region 9289	1904 bp downstream
Tssr9290	transcription start site region 9290	1750 bp downstream
Tssr9291	transcription start site region 9291	1702 bp downstream
Tssr9292	transcription start site region 9292	1574 bp downstream
Tssr9293	transcription start site region 9293	1558 bp downstream
Tssr9294	transcription start site region 9294	1535 bp downstream
Tssr9295	transcription start site region 9295	1508 bp downstream
Tssr9296	transcription start site region 9296	1496 bp downstream
Tssr9297	transcription start site region 9297	1483 bp downstream
Tssr9298	transcription start site region 9298	1457 bp downstream
Tssr9299	transcription start site region 9299	1439 bp downstream
Tssr9300	transcription start site region 9300	1420 bp downstream
Tssr9301	transcription start site region 9301	1287 bp downstream
Tssr9302	transcription start site region 9302	1263 bp downstream
Tssr9303	transcription start site region 9303	1187 bp downstream
Tssr9304	transcription start site region 9304	1167 bp downstream
Tssr9305	transcription start site region 9305	1158 bp downstream
Tssr9306	transcription start site region 9306	1146 bp downstream
Tssr9307	transcription start site region 9307	1120 bp downstream
Tssr9308	transcription start site region 9308	1103 bp downstream
Tssr9309	transcription start site region 9309	1081 bp downstream
Tssr9310	transcription start site region 9310	1056 bp downstream
Tssr9311	transcription start site region 9311	1033 bp downstream
Tssr9312	transcription start site region 9312	1015 bp downstream
Tssr9313	transcription start site region 9313	1007 bp downstream
Tssr9314	transcription start site region 9314	988 bp downstream
Tssr9315	transcription start site region 9315	896 bp downstream
Tssr9316	transcription start site region 9316	711 bp downstream
Tssr9317	transcription start site region 9317	425 bp downstream
Tssr9318	transcription start site region 9318	284 bp upstream