rs253829349 SNP Detail

Summary

• ID
  rs253829349
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:113881675 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGATTTACTG AGGAAGCAGA
  GTCTTATCTT GTTCTTGGAA TAGCATAATG ACTTCATTAA ATTACTAAGC CTATCACTGA
  TGTCACCTAA GAAGTAGATG GCTGTCTTTT GGCACAACTG AATTAATGAT GTCATTACAT
  CTTCTAGTCC CCTTAAGAAA AGATTTTGAC ACTCATCCAC TGTACATAGG CTGACAGGCT
  R
  CTATCTCTCA GATGGAAAGT CAAACCCTCA GAGTATCCTG GAGTAGCCTT CACTGGCCAA
  GCCTGAGGAC TCTAGCTCTG CTCTCTGGCA GCCTGTCTGG CCAAGCATGC GACAAACCCA
  GCGAGTGTGG CATTTCTTTT AATAAACAAG GTGGAATGCC ACTATCGCTA TGGCACTTGT
  TGCTCTGGTC ACATCTGACT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss355315611	MGP_WTSI_2_113876930	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs253829349					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss355315611	MGP_WTSI_2_113876930	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:113881675 () rs orientation: forward

Symbol	Name	Function Class
Actc1	actin, alpha, cardiac muscle 1	within coordinates
Rr562817	regulatory region 562817	1112 bp proximal
Rr562818	regulatory region 562818	1683 bp proximal
Tssr602	transcription start site region 602	714 bp upstream
Tssr19436	transcription start site region 19436	1612 bp downstream
Tssr19437	transcription start site region 19437	890 bp downstream
Tssr19438	transcription start site region 19438	774 bp downstream
Tssr19439	transcription start site region 19439	741 bp downstream
Tssr25670	transcription start site region 25670	1952 bp upstream
Tssr25671	transcription start site region 25671	1889 bp upstream
Tssr25672	transcription start site region 25672	1872 bp upstream
Tssr25673	transcription start site region 25673	1841 bp upstream
Tssr25674	transcription start site region 25674	1595 bp upstream
Tssr25675	transcription start site region 25675	1563 bp upstream
Tssr25676	transcription start site region 25676	1540 bp upstream
Tssr25677	transcription start site region 25677	1515 bp upstream
Tssr25678	transcription start site region 25678	850 bp upstream
Tssr25679	transcription start site region 25679	840 bp upstream
Tssr25680	transcription start site region 25680	829 bp upstream
Tssr25681	transcription start site region 25681	745 bp upstream
Tssr25682	transcription start site region 25682	706 bp upstream
Tssr25683	transcription start site region 25683	697 bp upstream
Tssr25684	transcription start site region 25684	579 bp upstream
Tssr25685	transcription start site region 25685	228 bp upstream
Tssr25686	transcription start site region 25686	104 bp downstream
Tssr25687	transcription start site region 25687	735 bp downstream
Tssr25688	transcription start site region 25688	799 bp downstream
Tssr25689	transcription start site region 25689	865 bp downstream
Tssr25690	transcription start site region 25690	883 bp downstream
Tssr25691	transcription start site region 25691	1005 bp downstream
Tssr25692	transcription start site region 25692	1610 bp downstream