rs253830628 SNP Detail

Summary

• ID
  rs253830628
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:43630243 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAATGCCGG TACTTAAAAA
  CACACAGAAT TCCCAAGTCC TACTATGATC CTCAGAGAAC CTCCCTAGGT CATTTTGAAC
  ATCTCTGCAA GACCCTGTGT CCAAGCTCCA GGACACAGGT TGGCCTGGAT GTTCCTGACA
  GTACACAATT TCACATTGCT GTGCTGTTCT CCTGCCCCTT CCTCCTGAAA ACCTCATTTT
  K
  GTCTCATTTT CTGGAATCTT AGTTCTCCTT ACCATTCTCC TATGCTGCAA CAATCAGAAG
  GGAAGTTCTA GTGGCTCCAG GCAGGAAAAA TCTCTGTGTT TCTTCATTTT GCCCTGGAAC
  TCAAGCTAGA TCTCTGCTTC TGAGACTTCT CACACTCGCA GCCAAGGCCA AGGCTTACCC
  TAATACCTAG TTCCAAACAG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320269136	CHEV_2_43595751	CHEVERUD	SCREENING_POP	f	SNP	T	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs253830628					SNP	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:43630243 () rs orientation: forward

Symbol	Name	Function Class
Gm39804	predicted gene, 39804	466 bp downstream
Rr556297	regulatory region 556297	291 bp distal
Tssr17595	transcription start site region 17595	684 bp downstream
Tssr23873	transcription start site region 23873	1551 bp upstream
Tssr23874	transcription start site region 23874	1202 bp upstream