rs253833615 SNP Detail

Summary

• ID
  rs253833615
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:46143398 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGGGTTGAG GATGTCTGCA
  GAAGCACTCT CACACCAACA GCCTTCCTCT CATCTGCCCC TCTTCATGCC TGTGTTGGTA
  TGCAGGTGGT CTCCATCCAT CCCCGGTGTA TCTTCATGAG CCCCTGGCTG AAGGGGTGAG
  TTTTTAAATC CACAATCATG CAGAGCCACA GCAGACATTA AACCAGGTTT GGGTAGGAAA
  R
  TTTCCCGGTG TGGACAATGA GACTTCTGGC TCTTGGTGGA CAGGAAGAGA AACCCCTATT
  GGATTTCCAG AGAGAACATA GTCCAGTCTG CTGGCTGTGC CAATGCAGTC TGGAAAGGAG
  CTTCCAACAC CTGGCAGAGG CTTTTCCGGT GCCAGCAACG TGGAAAATGG AAAGCTGGCC
  CTGCAGTGTG TTTTCTCCTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss377451266	MGP_WTSI_9_46040183	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs253833615					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss377451266	MGP_WTSI_9_46040183	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:46143398 () rs orientation: forward

Symbol	Name	Function Class
Apoa1	apolipoprotein A-I	1631 bp downstream
Apoc3	apolipoprotein C-III	950 bp downstream
Cpgi21701	CpG island 21701	1595 bp distal
D9Mit93	DNA segment, Chr 9, Massachusetts Institute of Technology 93	1255 bp proximal
Rr206362	regulatory region 206362	997 bp distal
Rr206363	regulatory region 206363	1402 bp proximal
Tssr84852	transcription start site region 84852	1904 bp downstream
Tssr84853	transcription start site region 84853	1870 bp downstream
Tssr84854	transcription start site region 84854	1857 bp downstream
Tssr84855	transcription start site region 84855	1837 bp downstream
Tssr84856	transcription start site region 84856	1826 bp downstream
Tssr84857	transcription start site region 84857	1704 bp downstream
Tssr84858	transcription start site region 84858	1667 bp downstream
Tssr84859	transcription start site region 84859	1032 bp upstream
Tssr84860	transcription start site region 84860	1171 bp upstream
Tssr84861	transcription start site region 84861	1217 bp upstream
Tssr89320	transcription start site region 89320	1998 bp upstream
Tssr89321	transcription start site region 89321	1973 bp upstream
Tssr89322	transcription start site region 89322	1890 bp upstream
Tssr89323	transcription start site region 89323	1838 bp upstream
Tssr89324	transcription start site region 89324	1810 bp upstream
Tssr89325	transcription start site region 89325	1785 bp upstream
Tssr89326	transcription start site region 89326	1751 bp upstream
Tssr89327	transcription start site region 89327	1637 bp upstream
Tssr89328	transcription start site region 89328	999 bp downstream
Tssr89329	transcription start site region 89329	1070 bp downstream
Tssr89330	transcription start site region 89330	1116 bp downstream
Tssr89331	transcription start site region 89331	1149 bp downstream
Tssr89332	transcription start site region 89332	1224 bp downstream