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rs253835850 SNP Detail
Summary
  • ID
    rs253835850
  • Variation Type
    SNP
  • Alleles
    A/G
Genome Location and Flanking Sequence
  • Location
    Chr19:5848794 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                TAAAGTAGGC ATTAATCATG
TAGGCTTTTG TGTTGAAGTT TACGATGCAA AAGCCTATTA GCTATCCCAT CATGAAAGCC
CATCGGTGCA AGGCTTAGGA ATTTTTAAGA GGCTGGATGG GAAAACTACT CAAAATTCTG
AACTGCCTAA GAGGGGCCAG CTGCAAACAT TCAACAGCTC TACAGGTCTT TTTGGAAAAA
R
AGAAAAAAGG CACTTATCTA TCCCTAACAT GCAATACTGC AGATCCAAGT TACACTTATC
TGTCAACAGC AGTCTGCTGT TTCCTGCTCC GAGATGGAAT GAAGCAACTC TTCTGCTTAT
GAAGAGAAAC CTGTCTGAGG CAAACGAAAC ATTGGCACAC TGCACCGCCT CGCAGCCGCT
CGATCCCACT CATCTCAACA                                            

R = A/G

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss401662586 MGP_WTSI_19_5798766 EVA_MGPV3 EVA_MGPV3 f SNP G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs253835850 SNP G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss401662586 MGP_WTSI_19_5798766 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP A/G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr19:5848794 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
Gm55521 predicted gene, 55521 234 bp downstream
Malat1 metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA) within coordinates
Rr543161 regulatory region 543161 401 bp distal
Rr543162 regulatory region 543162 within coordinates
Rr543163 regulatory region 543163 652 bp proximal
Tssr5415 transcription start site region 5415 1900 bp upstream
Tssr5416 transcription start site region 5416 1451 bp upstream
Tssr5417 transcription start site region 5417 260 bp downstream
Tssr5418 transcription start site region 5418 743 bp downstream
Tssr5419 transcription start site region 5419 1397 bp downstream
Tssr5420 transcription start site region 5420 1414 bp downstream
Tssr157649 transcription start site region 157649 1937 bp upstream
Tssr157650 transcription start site region 157650 1872 bp upstream
Tssr157651 transcription start site region 157651 1802 bp upstream
Tssr157652 transcription start site region 157652 1662 bp upstream
Tssr157653 transcription start site region 157653 1578 bp upstream
Tssr157654 transcription start site region 157654 1524 bp upstream
Tssr157655 transcription start site region 157655 1498 bp upstream
Tssr157656 transcription start site region 157656 1465 bp upstream
Tssr157657 transcription start site region 157657 1345 bp upstream
Tssr157658 transcription start site region 157658 1239 bp upstream
Tssr157659 transcription start site region 157659 1135 bp upstream
Tssr157660 transcription start site region 157660 1039 bp upstream
Tssr157661 transcription start site region 157661 1006 bp upstream
Tssr157662 transcription start site region 157662 913 bp upstream
Tssr157663 transcription start site region 157663 852 bp upstream
Tssr157664 transcription start site region 157664 738 bp upstream
Tssr157665 transcription start site region 157665 729 bp upstream
Tssr157666 transcription start site region 157666 697 bp upstream
Tssr157667 transcription start site region 157667 443 bp upstream
Tssr157668 transcription start site region 157668 402 bp upstream
Tssr157669 transcription start site region 157669 383 bp upstream
Tssr157670 transcription start site region 157670 367 bp upstream
Tssr157671 transcription start site region 157671 346 bp upstream
Tssr157672 transcription start site region 157672 296 bp upstream
Tssr157673 transcription start site region 157673 262 bp upstream
Tssr157674 transcription start site region 157674 250 bp upstream
Tssr157675 transcription start site region 157675 237 bp upstream
Tssr157676 transcription start site region 157676 222 bp upstream
Tssr157677 transcription start site region 157677 200 bp upstream
Tssr157678 transcription start site region 157678 186 bp upstream
Tssr157679 transcription start site region 157679 118 bp upstream
Tssr157680 transcription start site region 157680 91 bp upstream
Tssr157681 transcription start site region 157681 70 bp upstream
Tssr157682 transcription start site region 157682 57 bp upstream
Tssr157683 transcription start site region 157683 21 bp upstream
Tssr157684 transcription start site region 157684 11 bp upstream
Tssr157685 transcription start site region 157685 within coordinates
Tssr157686 transcription start site region 157686 9 bp downstream
Tssr157687 transcription start site region 157687 78 bp downstream
Tssr157688 transcription start site region 157688 128 bp downstream
Tssr157689 transcription start site region 157689 159 bp downstream
Tssr157690 transcription start site region 157690 237 bp downstream
Tssr157691 transcription start site region 157691 283 bp downstream
Tssr157692 transcription start site region 157692 337 bp downstream
Tssr157693 transcription start site region 157693 394 bp downstream
Tssr157694 transcription start site region 157694 452 bp downstream
Tssr157695 transcription start site region 157695 516 bp downstream
Tssr157696 transcription start site region 157696 537 bp downstream
Tssr157697 transcription start site region 157697 586 bp downstream
Tssr157698 transcription start site region 157698 602 bp downstream
Tssr157699 transcription start site region 157699 660 bp downstream
Tssr157700 transcription start site region 157700 709 bp downstream
Tssr157701 transcription start site region 157701 727 bp downstream
Tssr157702 transcription start site region 157702 763 bp downstream
Tssr157703 transcription start site region 157703 814 bp downstream
Tssr157704 transcription start site region 157704 840 bp downstream
Tssr157705 transcription start site region 157705 861 bp downstream
Tssr157706 transcription start site region 157706 909 bp downstream
Tssr157707 transcription start site region 157707 955 bp downstream
Tssr157708 transcription start site region 157708 965 bp downstream
Tssr157709 transcription start site region 157709 977 bp downstream
Tssr157710 transcription start site region 157710 996 bp downstream
Tssr157711 transcription start site region 157711 1015 bp downstream
Tssr157712 transcription start site region 157712 1052 bp downstream
Tssr157713 transcription start site region 157713 1079 bp downstream
Tssr157714 transcription start site region 157714 1130 bp downstream
Tssr157715 transcription start site region 157715 1147 bp downstream
Tssr157716 transcription start site region 157716 1191 bp downstream
Tssr157717 transcription start site region 157717 1218 bp downstream
Tssr157718 transcription start site region 157718 1263 bp downstream
Tssr157719 transcription start site region 157719 1317 bp downstream
Tssr157720 transcription start site region 157720 1336 bp downstream
Tssr157721 transcription start site region 157721 1372 bp downstream
Tssr157722 transcription start site region 157722 1389 bp downstream
Tssr157723 transcription start site region 157723 1464 bp downstream
Tssr157724 transcription start site region 157724 1473 bp downstream
Tssr157725 transcription start site region 157725 1519 bp downstream
Tssr157726 transcription start site region 157726 1524 bp downstream
Tssr157727 transcription start site region 157727 1539 bp downstream
Tssr157728 transcription start site region 157728 1636 bp downstream
Tssr157729 transcription start site region 157729 1835 bp downstream
Tssr157730 transcription start site region 157730 1965 bp downstream
Tssr157731 transcription start site region 157731 1988 bp downstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory