rs253837344 SNP Detail

Summary

• ID
  rs253837344
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:25111925 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTTGGGATA AAGAGGGTCC
  TTTCTTTTTG CTAATGAGGA TTCTGGTACT GAGAAAGACT AACTTAATTA CCCCAACTTG
  TTGCTAAAAG AGTATTTTAA TGCACTTGTT GTTGGGTTTG CCATGTTTTC TACCCCATTT
  CTTCCCCACA AAATCAAATT AATCTTTGGT GTGCACATGG TTCTGGTGAA GTAGAAATTA
  R
  TCTTGAGCCA GGCATGGTGG CACACCTATA ATACTGGGAC CCAGGATACT GTGGTCGGAA
  GAGTCCAAGT TTTCGGTCAG CCTGACTACA TATCAAGAGC CTGTCTCAAG GGAGAGAAAA
  ATAGAAGGGA GGAGGACGGA CAAAATAAAG AGGAAGGGAG GGAGAGAAGG AGAAGAGAGA
  ATATCATTTC ATTGTATTTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322121681	CHEV_7_26197519	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs253837344					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:25111925 () rs orientation: forward

Symbol	Name	Function Class
4732471J01Rik	RIKEN cDNA 4732471J01 gene	within coordinates
Cxcl17	C-X-C motif chemokine ligand 17	within coordinates
Rr160903	regulatory region 160903	1124 bp distal
Rr164493	regulatory region 164493	1205 bp proximal
Rr170192	regulatory region 170192	174 bp distal
Rr170193	regulatory region 170193	77 bp proximal
Tssr2143	transcription start site region 2143	297 bp downstream
Tssr2144	transcription start site region 2144	447 bp downstream
Tssr2145	transcription start site region 2145	465 bp downstream
Tssr2146	transcription start site region 2146	483 bp downstream
Tssr2147	transcription start site region 2147	526 bp downstream
Tssr71243	transcription start site region 71243	307 bp downstream
Tssr71244	transcription start site region 71244	332 bp downstream
Tssr71245	transcription start site region 71245	345 bp downstream
Tssr71246	transcription start site region 71246	357 bp downstream
Tssr71247	transcription start site region 71247	402 bp downstream