rs253837978 SNP Detail

Summary

• ID
  rs253837978
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:45817705 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTCCCCGCC GCCCCCTCCC
  CGCCGCCCCC TCCTCCTCCG CCGCGCCCCC CTAGTCCCGC CGTCCCGACC CGCGCGCGCC
  GCCCCGCACA CACCTCCCGC GCCGCGCCCC CGGGGAGCCA AGCGGGGGGG AGGGAAGGGA
  CGCACCTGAG CGGGCGGAGC GGGGGAGGGG GCGGCCAAGC CTGGGGGAGG GGTCGAGCGC
  Y
  GGCCCGCGCG CGGCACCTCC CACTTCCGGC GGCGCGAGCG CAAGGGGGCG AGGCCGGGGC
  GGCGAGAGGA GCGGAACCCG CGGGGTGAGC GGCCGCCACC GACGGCGCCC TCTGGCGGCA
  GGCGCGGACA GCGACCGGAC AACGGAGCCG CTGAGGGGAC CAGCCCTGAG ACCCAAGCGG
  AGCCCGAGGG ACACGCGGGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss377444889	MGP_WTSI_9_45714490	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs253837978					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss377444889	MGP_WTSI_9_45714490	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:45817705 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21697	CpG island 21697	within coordinates
Pcsk7	proprotein convertase subtilisin/kexin type 7	90 bp upstream
Rnf214	ring finger protein 214	within coordinates
Rr677992	regulatory region 677992	11 bp distal
Rr677993	regulatory region 677993	within coordinates
Rr677994	regulatory region 677994	34 bp proximal
Rr677995	regulatory region 677995	101 bp proximal
Rr677996	regulatory region 677996	102 bp proximal
Rr677997	regulatory region 677997	452 bp proximal
Rr677998	regulatory region 677998	589 bp proximal
Rr677999	regulatory region 677999	1251 bp proximal
Tssr84815	transcription start site region 84815	106 bp upstream
Tssr84816	transcription start site region 84816	518 bp upstream
Tssr89273	transcription start site region 89273	within coordinates
Tssr89274	transcription start site region 89274	430 bp downstream
Tssr89275	transcription start site region 89275	491 bp downstream
Tssr89276	transcription start site region 89276	1178 bp downstream