rs253843438 SNP Detail

Summary

• ID
  rs253843438
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:131457128 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATAAAGATA GCAAACTTGA
  GCATTTTAAA ACATAAGGAA GTAAAACTAT ACATAGAGCC TCTGCACCCC TTTGAAATAT
  TTTGTGAATT TGCTTAGGTA GTCATCATTT ATTACCAAGG TAAATGAGGT GTTATTTTGT
  TTGTGTAGGT GCACTTGTAT AACGAAATAG CAGTAGATAA TAAAACCGTA AAACCAAATG
  Y
  CCCAAAGGTT CTATGATCCC AATGTTGTTT TAGTTAGATA TGCTCACGTA AAAATCTGAA
  ATATTCTATC TCTTCAACAT AAAACTGTGG TCATAAGGAA GTCTCAGGTT GGGTTGTTAC
  ATGTTGGAGT CTAGCATAGA ATCAGGTTTT CTGTATTGCT TGTTTTTCTC TATTGGAATT
  ATAATCACAG TGGATTCATG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss351452148	MGP_WTSI_1_133425967	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs253843438					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss351452148	MGP_WTSI_1_133425967	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:131457128 () rs orientation: forward

Symbol	Name	Function Class
Cpgi711	CpG island 711	749 bp distal
Fam72a	family with sequence similarity 72, member A	within coordinates
Gm70877	predicted gene, 70877	1702 bp downstream
Rr396286	regulatory region 396286	1807 bp downstream
Rr396287	regulatory region 396287	1497 bp downstream
Rr418132	regulatory region 418132	1477 bp distal
Rr418133	regulatory region 418133	1235 bp distal
Tssr8629	transcription start site region 8629	1519 bp downstream
Tssr8630	transcription start site region 8630	1479 bp downstream
Tssr8631	transcription start site region 8631	1388 bp downstream
Tssr8632	transcription start site region 8632	1014 bp downstream
Tssr13603	transcription start site region 13603	1850 bp upstream