rs253850324 SNP Detail

Summary

• ID
  rs253850324
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:3123968 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACACAAACG GTCATCTCAG
  AAGAAAAGAG GAGCCGGGCG TGGTGGTGCA CTCCTTTAAG CCCAGCACTC GGGAGGCAGA
  GGCAGGCAGA TTTCTAAGTT CGAGGCCAGC CAGGTCTACA GAGTGAGTTC CAGGACAGAC
  AGGGCTACAC AGAGAAACCC TGTCTCGAAA AACCAAAAAA AAAAAAAAGG AAGAAGAAGA
  G
  GAGGAGGAGG AAGAAAAGAG GGTTCCAAGA GTTTGTGCCT GTGACCTCAG CATTCACATC
  AGCTGGAACT GCACAGCAAG GTCTGGTCTC TCAGAGTAAA GTCAAGAGGA CTAGGACTTT
  ATGACTATAG ATTCTGTGTA ATATAATAAC GGAAAACTAC TGACTCATAA ATCTGATGCC
  ATATTAAAAT GAGCCAATTC                                            
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss382237252	MGP_WTSI_11_3073971	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs253850324					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss382237252	MGP_WTSI_11_3073971	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:3123968 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2457	CpG island 2457	1387 bp distal
Cpgi2458	CpG island 2458	162 bp distal
Rr441481	regulatory region 441481	1518 bp distal
Rr441483	regulatory region 441483	1752 bp distal
Rr441484	regulatory region 441484	1018 bp distal
Rr441485	regulatory region 441485	144 bp distal
Rr441486	regulatory region 441486	5 bp proximal
Rr441487	regulatory region 441487	1210 bp proximal
Rr441488	regulatory region 441488	1641 bp proximal
Rr441489	regulatory region 441489	1711 bp proximal
Sfi1	Sfi1 homolog, spindle assembly associated (yeast)	within coordinates
Tssr106448	transcription start site region 106448	1171 bp upstream
Tssr106449	transcription start site region 106449	639 bp upstream