rs253850956 SNP Detail

Summary

• ID
  rs253850956
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:44148257 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GATTTTagc tggacacggt ggttcacatg
  tttaatcaca gcacttggga ggcagagtta ggcaaatctc tgagtttaaa tccagcctga
  actacaaatt ttagtcagcc aggaatgtat gagaccttgt ctcaaaaaaa aaaaaAAAAA
  R
  AAAAAAAGCC GAAAGAAAAA AAATGCCTGA ATTCACCCAA TTATCTCCTT ACCTAAGTGG
  AGAACATCGC TCCGTTTTCT GCCCTGGTAA GATTTACAGT TTCCAACAAC AGGCTTTGAA
  TGTTAAATGC AATCTAGGGG TCTCTCTGAC                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322199056	CHEV_7_51754203	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs253850956					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:44148257 () rs orientation: forward

Symbol	Name	Function Class
4921540A03Rik	RIKEN cDNA 4921540A03 gene	1110 bp upstream
Cpgi18969	CpG island 18969	1679 bp distal
Cpgi18970	CpG island 18970	1206 bp proximal
Garin5a	golgi associated RAB2 interactor 5A	within coordinates
Rr380742	regulatory region 380742	758 bp downstream
Rr646109	regulatory region 646109	1899 bp distal
Rr646110	regulatory region 646110	1851 bp distal
Tssr66391	transcription start site region 66391	1580 bp downstream