rs253851873 SNP Detail

Summary

• ID
  rs253851873
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:29690080 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTTTCAAAA AAGCAAAACA
  AATAAACTGA GAGCAGAAAT AACCGGCTTA AAGGGAATAC GGTCCAGAGG GACTTAAAAG
  TGAGTTCAGC AAAACCTGAT GGTTAAAGCT CTTCATGTCC CAGACACCGC CTCAGAGCCT
  CTCCCTGCCA CTCCAAAAGA CAGCAACACA TCTGGAAAGC TGAGGAACGT TCCGCCCTCC
  R
  AGCCCTTCGA GCCACCTCGG ACCCGAACCC TGCGCGTGTC TGCCAACTAG CAAGCAACTT
  CCGGTCGGCA GTGCTGTGGC CTCAAAGACT CTCGGTCAAA CCGGAACCAA GTGAGGGGGG
  TGGGGAAAAG GACCCTCAAA CAATGTTTCT CCTAGACGTC ATATCCGGTC TCCTGACTCA
  GGCAGTATCC ACGCCAGCGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss390672109	MGP_WTSI_14_30781309	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs253851873					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss390672109	MGP_WTSI_14_30781309	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:29690080 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6266	CpG island 6266	within coordinates
Gm47414	predicted gene, 47414	28 bp upstream
Rr369802	regulatory region 369802	within coordinates
Rr369803	regulatory region 369803	68 bp upstream
Rr489727	regulatory region 489727	within coordinates
Rr489728	regulatory region 489728	196 bp proximal
Selenok	selenoprotein K	257 bp upstream
Tssr124803	transcription start site region 124803	194 bp upstream
Tssr124804	transcription start site region 124804	227 bp upstream
Tssr124805	transcription start site region 124805	246 bp upstream
Tssr127829	transcription start site region 127829	35 bp downstream