rs253853701 SNP Detail

Summary

• ID
  rs253853701
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:125672349 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    actagccag agtcctctgg gaagaggaaa
  tctcagttga gaaaaagctt ccatcggatt ggccagtagg caagtctgtg gggagatttt
  cttgattaat aattgatgtg gaatgacccc ttccattgtg ggcagtgcca cccttgggca
  R
  gcagtatggg ttgtacaTGT ATCTTACTAC TTCAGCTAGT CCAATTAGAA ACTCTTTCAC
  CAATATTCCC AGGTCTCTGG AGATCCTGTC AAATGGGTAA CAAGTGTTAA CCATCACATT
  CCTTGTAGCT TGTTCAGCGT ATAGCAAGGA                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss319956348	CHEV_1_127641189	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs253853701					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:125672349 () rs orientation: forward

Symbol	Name	Function Class
Gpr39	G protein-coupled receptor 39	within coordinates
Rr371980	regulatory region 371980	within coordinates